Strain Fitness in Escherichia coli BL21 around ECD_03757

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03756 and ECD_03757 are separated by 216 nucleotidesECD_03757 and ECD_03758 are separated by 7 nucleotides ECD_03756: ECD_03756 - GTP-binding protein, at 3,965,105 to 3,966,928 _03756 ECD_03757: ECD_03757 - putative DNA-binding transcriptional regulator, at 3,967,145 to 3,967,855 _03757 ECD_03758: ECD_03758 - putative sugar phosphate isomerase, at 3,967,863 to 3,968,843 _03758 Position (kb) 3967 3968Strain fitness (log2 ratio) -2 -1 0 1 2at 3966.290 kb on - strand, within ECD_03756at 3966.370 kb on + strand, within ECD_03756at 3966.414 kb on + strand, within ECD_03756at 3966.414 kb on + strand, within ECD_03756at 3966.415 kb on - strand, within ECD_03756at 3966.415 kb on - strand, within ECD_03756at 3966.500 kb on + strand, within ECD_03756at 3966.528 kb on + strand, within ECD_03756at 3966.586 kb on + strand, within ECD_03756at 3966.685 kb on + strand, within ECD_03756at 3966.708 kb on + strand, within ECD_03756at 3966.709 kb on - strand, within ECD_03756at 3966.837 kb on + strandat 3966.927 kb on - strandat 3967.007 kb on + strandat 3967.008 kb on - strandat 3967.016 kb on + strandat 3967.016 kb on + strandat 3967.016 kb on + strandat 3967.018 kb on + strandat 3967.058 kb on - strandat 3967.072 kb on - strandat 3967.140 kb on - strandat 3967.168 kb on - strandat 3967.270 kb on + strand, within ECD_03757at 3967.370 kb on - strand, within ECD_03757at 3967.556 kb on - strand, within ECD_03757at 3967.578 kb on - strand, within ECD_03757at 3967.578 kb on - strand, within ECD_03757at 3967.579 kb on + strand, within ECD_03757at 3967.579 kb on + strand, within ECD_03757at 3967.579 kb on + strand, within ECD_03757at 3967.580 kb on - strand, within ECD_03757at 3967.582 kb on + strand, within ECD_03757at 3967.724 kb on + strand, within ECD_03757at 3967.724 kb on + strand, within ECD_03757at 3968.117 kb on + strand, within ECD_03758at 3968.218 kb on - strand, within ECD_03758at 3968.239 kb on + strand, within ECD_03758at 3968.239 kb on + strand, within ECD_03758at 3968.240 kb on - strand, within ECD_03758at 3968.268 kb on + strand, within ECD_03758at 3968.273 kb on - strand, within ECD_03758at 3968.546 kb on + strand, within ECD_03758at 3968.614 kb on - strand, within ECD_03758

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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3,966,290 - ECD_03756 0.65 -1.4
3,966,370 + ECD_03756 0.69 +0.1
3,966,414 + ECD_03756 0.72 +0.6
3,966,414 + ECD_03756 0.72 +0.4
3,966,415 - ECD_03756 0.72 +0.2
3,966,415 - ECD_03756 0.72 -0.1
3,966,500 + ECD_03756 0.76 -0.2
3,966,528 + ECD_03756 0.78 -1.8
3,966,586 + ECD_03756 0.81 -1.0
3,966,685 + ECD_03756 0.87 +1.9
3,966,708 + ECD_03756 0.88 -0.5
3,966,709 - ECD_03756 0.88 -0.2
3,966,837 + -0.0
3,966,927 - +0.2
3,967,007 + +0.4
3,967,008 - +0.0
3,967,016 + +0.0
3,967,016 + -0.5
3,967,016 + +0.5
3,967,018 + -0.8
3,967,058 - -0.2
3,967,072 - +0.2
3,967,140 - +0.0
3,967,168 - -0.3
3,967,270 + ECD_03757 0.18 +0.1
3,967,370 - ECD_03757 0.32 +1.3
3,967,556 - ECD_03757 0.58 -0.5
3,967,578 - ECD_03757 0.61 -0.1
3,967,578 - ECD_03757 0.61 -0.5
3,967,579 + ECD_03757 0.61 -0.3
3,967,579 + ECD_03757 0.61 +0.2
3,967,579 + ECD_03757 0.61 +0.3
3,967,580 - ECD_03757 0.61 -0.6
3,967,582 + ECD_03757 0.61 +0.2
3,967,724 + ECD_03757 0.81 +0.5
3,967,724 + ECD_03757 0.81 +0.2
3,968,117 + ECD_03758 0.26 +0.2
3,968,218 - ECD_03758 0.36 +1.2
3,968,239 + ECD_03758 0.38 -0.0
3,968,239 + ECD_03758 0.38 +0.0
3,968,240 - ECD_03758 0.38 +0.6
3,968,268 + ECD_03758 0.41 +0.2
3,968,273 - ECD_03758 0.42 +0.2
3,968,546 + ECD_03758 0.70 +0.1
3,968,614 - ECD_03758 0.77 -0.1

Or see this region's nucleotide sequence