Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03734 and ECD_03735 are separated by 45 nucleotides ECD_03735 and ECD_03736 are separated by 282 nucleotides
ECD_03734: ECD_03734 - 3-octaprenyl-4-hydroxybenzoate decarboxylase, at 3,931,899 to 3,933,392
_03734
ECD_03735: ECD_03735 - NAD(P)H-flavin reductase, at 3,933,438 to 3,934,139
_03735
ECD_03736: ECD_03736 - 3-ketoacyl-CoA thiolase (thiolase I), at 3,934,422 to 3,935,585
_03736
Position (kb)
3933
3934
3935 Strain fitness (log2 ratio)
-2
-1
0
1 at 3933.371 kb on + strand at 3933.371 kb on + strand at 3933.380 kb on + strand at 3933.381 kb on - strand at 3933.381 kb on - strand at 3933.412 kb on - strand at 3933.416 kb on - strand at 3933.448 kb on + strand at 3933.449 kb on - strand at 3933.449 kb on - strand at 3933.449 kb on - strand at 3933.490 kb on + strand at 3933.490 kb on + strand at 3933.491 kb on - strand at 3933.491 kb on - strand at 3933.493 kb on - strand at 3933.543 kb on + strand, within ECD_03735 at 3933.629 kb on + strand, within ECD_03735 at 3933.630 kb on - strand, within ECD_03735 at 3933.836 kb on + strand, within ECD_03735 at 3933.876 kb on + strand, within ECD_03735 at 3933.877 kb on - strand, within ECD_03735 at 3933.877 kb on - strand, within ECD_03735 at 3934.028 kb on + strand, within ECD_03735 at 3934.028 kb on + strand, within ECD_03735 at 3934.028 kb on + strand, within ECD_03735 at 3934.028 kb on + strand, within ECD_03735 at 3934.028 kb on + strand, within ECD_03735 at 3934.029 kb on - strand, within ECD_03735 at 3934.029 kb on - strand, within ECD_03735 at 3934.032 kb on + strand, within ECD_03735 at 3934.032 kb on + strand, within ECD_03735 at 3934.032 kb on + strand, within ECD_03735 at 3934.033 kb on - strand, within ECD_03735 at 3934.033 kb on - strand, within ECD_03735 at 3934.033 kb on - strand, within ECD_03735 at 3934.033 kb on - strand, within ECD_03735 at 3934.035 kb on - strand, within ECD_03735 at 3934.133 kb on + strand at 3934.144 kb on + strand at 3934.144 kb on + strand at 3934.191 kb on + strand at 3934.205 kb on + strand at 3934.211 kb on + strand at 3934.212 kb on - strand at 3934.212 kb on - strand at 3934.218 kb on + strand at 3934.219 kb on - strand at 3934.219 kb on - strand at 3934.257 kb on + strand at 3934.266 kb on + strand at 3934.267 kb on - strand at 3934.272 kb on + strand at 3934.272 kb on + strand at 3934.273 kb on - strand at 3934.356 kb on - strand at 3934.466 kb on + strand at 3934.467 kb on - strand at 3934.628 kb on + strand, within ECD_03736 at 3934.631 kb on + strand, within ECD_03736 at 3934.810 kb on - strand, within ECD_03736 at 3934.810 kb on - strand, within ECD_03736 at 3934.877 kb on + strand, within ECD_03736 at 3934.878 kb on - strand, within ECD_03736 at 3934.892 kb on + strand, within ECD_03736 at 3935.118 kb on - strand, within ECD_03736 at 3935.118 kb on - strand, within ECD_03736 at 3935.118 kb on - strand, within ECD_03736
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,933,371 + +0.0 3,933,371 + -0.3 3,933,380 + +0.0 3,933,381 - -0.7 3,933,381 - -1.8 3,933,412 - -0.9 3,933,416 - -0.4 3,933,448 + -0.9 3,933,449 - -1.5 3,933,449 - -1.3 3,933,449 - -1.2 3,933,490 + -1.4 3,933,490 + -0.9 3,933,491 - -2.0 3,933,491 - -1.3 3,933,493 - -1.1 3,933,543 + ECD_03735 0.15 +0.1 3,933,629 + ECD_03735 0.27 -2.0 3,933,630 - ECD_03735 0.27 -2.4 3,933,836 + ECD_03735 0.57 -2.0 3,933,876 + ECD_03735 0.62 -1.3 3,933,877 - ECD_03735 0.63 -1.6 3,933,877 - ECD_03735 0.63 -1.3 3,934,028 + ECD_03735 0.84 -0.4 3,934,028 + ECD_03735 0.84 -1.2 3,934,028 + ECD_03735 0.84 -1.4 3,934,028 + ECD_03735 0.84 -1.0 3,934,028 + ECD_03735 0.84 -0.8 3,934,029 - ECD_03735 0.84 -1.4 3,934,029 - ECD_03735 0.84 -1.1 3,934,032 + ECD_03735 0.85 -1.2 3,934,032 + ECD_03735 0.85 -1.4 3,934,032 + ECD_03735 0.85 -1.2 3,934,033 - ECD_03735 0.85 -1.5 3,934,033 - ECD_03735 0.85 -1.0 3,934,033 - ECD_03735 0.85 -1.2 3,934,033 - ECD_03735 0.85 -0.3 3,934,035 - ECD_03735 0.85 -2.6 3,934,133 + -0.9 3,934,144 + -0.0 3,934,144 + -0.1 3,934,191 + -0.3 3,934,205 + +0.6 3,934,211 + +0.1 3,934,212 - +0.1 3,934,212 - -0.1 3,934,218 + +0.1 3,934,219 - -0.3 3,934,219 - -0.1 3,934,257 + +0.1 3,934,266 + -1.0 3,934,267 - +1.1 3,934,272 + +0.1 3,934,272 + -1.6 3,934,273 - -0.1 3,934,356 - +0.3 3,934,466 + -0.2 3,934,467 - +0.8 3,934,628 + ECD_03736 0.18 -0.0 3,934,631 + ECD_03736 0.18 +0.7 3,934,810 - ECD_03736 0.33 +0.8 3,934,810 - ECD_03736 0.33 -0.1 3,934,877 + ECD_03736 0.39 +0.2 3,934,878 - ECD_03736 0.39 +0.2 3,934,892 + ECD_03736 0.40 -0.5 3,935,118 - ECD_03736 0.60 -0.6 3,935,118 - ECD_03736 0.60 +0.3 3,935,118 - ECD_03736 0.60 -0.4
Or see this region's nucleotide sequence