Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03672 and ECD_03673 are separated by 2 nucleotides ECD_03673 and ECD_03674 are separated by 190 nucleotides
ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193
_03672
ECD_03673: ECD_03673 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 3,870,196 to 3,870,936
_03673
ECD_03674: ECD_03674 - putative APC family amino acid transporter, at 3,871,127 to 3,872,512
_03674
Position (kb)
3870
3871 Strain fitness (log2 ratio)
-1
0
1 at 3870.120 kb on - strand at 3870.120 kb on - strand at 3870.151 kb on + strand at 3870.151 kb on + strand at 3870.151 kb on + strand at 3870.201 kb on + strand at 3870.223 kb on + strand at 3870.224 kb on - strand at 3870.224 kb on - strand at 3870.226 kb on - strand at 3870.239 kb on + strand at 3870.281 kb on - strand, within ECD_03673 at 3870.281 kb on - strand, within ECD_03673 at 3870.281 kb on - strand, within ECD_03673 at 3870.303 kb on + strand, within ECD_03673 at 3870.377 kb on + strand, within ECD_03673 at 3870.382 kb on - strand, within ECD_03673 at 3870.397 kb on - strand, within ECD_03673 at 3870.400 kb on + strand, within ECD_03673 at 3870.401 kb on - strand, within ECD_03673 at 3870.423 kb on - strand, within ECD_03673 at 3870.435 kb on + strand, within ECD_03673 at 3870.573 kb on + strand, within ECD_03673 at 3870.600 kb on + strand, within ECD_03673 at 3870.622 kb on + strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.781 kb on + strand, within ECD_03673 at 3870.782 kb on - strand, within ECD_03673 at 3870.782 kb on - strand, within ECD_03673 at 3870.850 kb on + strand, within ECD_03673 at 3870.995 kb on + strand at 3871.016 kb on + strand at 3871.024 kb on + strand at 3871.024 kb on + strand at 3871.072 kb on - strand at 3871.072 kb on - strand at 3871.072 kb on - strand at 3871.136 kb on - strand at 3871.150 kb on - strand at 3871.174 kb on + strand at 3871.174 kb on + strand at 3871.220 kb on - strand at 3871.220 kb on - strand at 3871.260 kb on + strand at 3871.272 kb on - strand, within ECD_03674 at 3871.272 kb on - strand, within ECD_03674 at 3871.274 kb on - strand, within ECD_03674 at 3871.274 kb on - strand, within ECD_03674 at 3871.274 kb on - strand, within ECD_03674 at 3871.287 kb on + strand, within ECD_03674 at 3871.374 kb on - strand, within ECD_03674 at 3871.375 kb on + strand, within ECD_03674 at 3871.375 kb on + strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.413 kb on - strand, within ECD_03674 at 3871.420 kb on + strand, within ECD_03674 at 3871.420 kb on + strand, within ECD_03674 at 3871.467 kb on - strand, within ECD_03674 at 3871.563 kb on - strand, within ECD_03674 at 3871.682 kb on - strand, within ECD_03674 at 3871.747 kb on + strand, within ECD_03674 at 3871.747 kb on + strand, within ECD_03674 at 3871.748 kb on - strand, within ECD_03674 at 3871.748 kb on - strand, within ECD_03674 at 3871.763 kb on + strand, within ECD_03674 at 3871.789 kb on + strand, within ECD_03674 at 3871.837 kb on - strand, within ECD_03674 at 3871.869 kb on - strand, within ECD_03674 at 3871.872 kb on + strand, within ECD_03674 at 3871.872 kb on + strand, within ECD_03674 at 3871.873 kb on - strand, within ECD_03674 at 3871.873 kb on - strand, within ECD_03674 at 3871.917 kb on + strand, within ECD_03674 at 3871.918 kb on - strand, within ECD_03674 at 3871.918 kb on - strand, within ECD_03674
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,870,120 - +0.4 3,870,120 - -0.2 3,870,151 + +0.2 3,870,151 + -0.0 3,870,151 + +0.3 3,870,201 + -0.4 3,870,223 + -0.1 3,870,224 - -0.6 3,870,224 - -0.4 3,870,226 - -0.8 3,870,239 + -0.5 3,870,281 - ECD_03673 0.11 -0.1 3,870,281 - ECD_03673 0.11 -0.2 3,870,281 - ECD_03673 0.11 -0.6 3,870,303 + ECD_03673 0.14 -0.5 3,870,377 + ECD_03673 0.24 -1.1 3,870,382 - ECD_03673 0.25 -1.1 3,870,397 - ECD_03673 0.27 -1.2 3,870,400 + ECD_03673 0.28 -0.7 3,870,401 - ECD_03673 0.28 -0.2 3,870,423 - ECD_03673 0.31 -0.4 3,870,435 + ECD_03673 0.32 +0.2 3,870,573 + ECD_03673 0.51 -0.7 3,870,600 + ECD_03673 0.55 -0.5 3,870,622 + ECD_03673 0.57 -0.4 3,870,628 - ECD_03673 0.58 -0.9 3,870,628 - ECD_03673 0.58 -1.6 3,870,628 - ECD_03673 0.58 -0.7 3,870,760 + ECD_03673 0.76 -0.3 3,870,760 + ECD_03673 0.76 -0.7 3,870,760 + ECD_03673 0.76 -0.4 3,870,761 - ECD_03673 0.76 -1.4 3,870,761 - ECD_03673 0.76 -0.0 3,870,761 - ECD_03673 0.76 -1.2 3,870,761 - ECD_03673 0.76 -0.1 3,870,781 + ECD_03673 0.79 -0.7 3,870,782 - ECD_03673 0.79 -0.9 3,870,782 - ECD_03673 0.79 -1.5 3,870,850 + ECD_03673 0.88 -0.5 3,870,995 + +0.2 3,871,016 + -0.2 3,871,024 + -0.1 3,871,024 + +0.4 3,871,072 - -0.3 3,871,072 - +0.5 3,871,072 - -0.2 3,871,136 - -1.0 3,871,150 - -0.4 3,871,174 + -0.7 3,871,174 + -0.1 3,871,220 - +0.2 3,871,220 - +0.5 3,871,260 + -0.1 3,871,272 - ECD_03674 0.10 -0.6 3,871,272 - ECD_03674 0.10 -0.5 3,871,274 - ECD_03674 0.11 -0.2 3,871,274 - ECD_03674 0.11 -0.1 3,871,274 - ECD_03674 0.11 +0.2 3,871,287 + ECD_03674 0.12 +0.4 3,871,374 - ECD_03674 0.18 -0.3 3,871,375 + ECD_03674 0.18 +0.0 3,871,375 + ECD_03674 0.18 +0.2 3,871,376 - ECD_03674 0.18 -0.7 3,871,376 - ECD_03674 0.18 +1.1 3,871,376 - ECD_03674 0.18 +0.7 3,871,376 - ECD_03674 0.18 -0.2 3,871,376 - ECD_03674 0.18 -0.1 3,871,413 - ECD_03674 0.21 -0.3 3,871,420 + ECD_03674 0.21 -0.4 3,871,420 + ECD_03674 0.21 +1.6 3,871,467 - ECD_03674 0.25 +0.1 3,871,563 - ECD_03674 0.31 -0.3 3,871,682 - ECD_03674 0.40 +0.5 3,871,747 + ECD_03674 0.45 +0.1 3,871,747 + ECD_03674 0.45 +0.0 3,871,748 - ECD_03674 0.45 +0.2 3,871,748 - ECD_03674 0.45 -0.3 3,871,763 + ECD_03674 0.46 -0.3 3,871,789 + ECD_03674 0.48 -0.7 3,871,837 - ECD_03674 0.51 -0.2 3,871,869 - ECD_03674 0.54 -0.2 3,871,872 + ECD_03674 0.54 +0.4 3,871,872 + ECD_03674 0.54 +0.6 3,871,873 - ECD_03674 0.54 +1.0 3,871,873 - ECD_03674 0.54 -0.2 3,871,917 + ECD_03674 0.57 +0.0 3,871,918 - ECD_03674 0.57 -0.8 3,871,918 - ECD_03674 0.57 -0.5
Or see this region's nucleotide sequence