Strain Fitness in Escherichia coli BL21 around ECD_03657

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03656 and ECD_03657 are separated by 46 nucleotidesECD_03657 and ECD_03658 are separated by 133 nucleotides ECD_03656: ECD_03656 - DNA helicase and single-stranded DNA-dependent ATPase, at 3,850,919 to 3,852,940 _03656 ECD_03657: ECD_03657 - guanosine pentaphosphatase/exopolyphosphatase, at 3,852,987 to 3,854,471 _03657 ECD_03658: ECD_03658 - ATP-dependent RNA helicase, at 3,854,605 to 3,855,870 _03658 Position (kb) 3852 3853 3854 3855Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3852.981 kb on + strandat 3852.982 kb on - strandat 3852.982 kb on - strandat 3852.982 kb on - strandat 3852.982 kb on - strandat 3853.015 kb on + strandat 3853.015 kb on + strandat 3853.015 kb on + strandat 3853.015 kb on + strandat 3853.015 kb on + strandat 3853.016 kb on - strandat 3853.016 kb on - strandat 3853.016 kb on - strandat 3853.016 kb on - strandat 3853.016 kb on - strandat 3853.016 kb on - strandat 3853.119 kb on + strandat 3853.120 kb on - strandat 3853.120 kb on - strandat 3853.326 kb on - strand, within ECD_03657at 3853.336 kb on + strand, within ECD_03657at 3853.503 kb on - strand, within ECD_03657at 3853.511 kb on + strand, within ECD_03657at 3853.512 kb on - strand, within ECD_03657at 3853.512 kb on - strand, within ECD_03657at 3853.526 kb on + strand, within ECD_03657at 3853.529 kb on + strand, within ECD_03657at 3853.529 kb on + strand, within ECD_03657at 3853.566 kb on - strand, within ECD_03657at 3853.577 kb on + strand, within ECD_03657at 3853.577 kb on + strand, within ECD_03657at 3853.578 kb on - strand, within ECD_03657at 3853.578 kb on - strand, within ECD_03657at 3853.578 kb on - strand, within ECD_03657at 3853.578 kb on - strand, within ECD_03657at 3853.622 kb on + strand, within ECD_03657at 3853.623 kb on - strand, within ECD_03657at 3853.683 kb on + strand, within ECD_03657at 3853.683 kb on + strand, within ECD_03657at 3853.779 kb on - strand, within ECD_03657at 3853.867 kb on + strand, within ECD_03657at 3853.872 kb on + strand, within ECD_03657at 3853.872 kb on + strand, within ECD_03657at 3853.873 kb on - strand, within ECD_03657at 3854.056 kb on - strand, within ECD_03657at 3854.057 kb on + strand, within ECD_03657at 3854.058 kb on - strand, within ECD_03657at 3854.111 kb on - strand, within ECD_03657at 3854.211 kb on + strand, within ECD_03657at 3854.212 kb on - strand, within ECD_03657at 3854.253 kb on - strand, within ECD_03657at 3854.312 kb on + strand, within ECD_03657at 3854.313 kb on - strand, within ECD_03657at 3854.450 kb on - strandat 3854.450 kb on - strandat 3854.471 kb on + strandat 3854.529 kb on - strandat 3854.529 kb on - strandat 3854.529 kb on - strandat 3854.529 kb on - strandat 3854.531 kb on + strandat 3854.531 kb on + strandat 3854.531 kb on + strandat 3854.532 kb on - strandat 3854.532 kb on - strandat 3854.532 kb on - strandat 3854.532 kb on - strandat 3854.532 kb on - strandat 3854.532 kb on - strandat 3854.532 kb on - strandat 3854.537 kb on - strandat 3854.537 kb on - strandat 3854.537 kb on - strandat 3854.537 kb on - strandat 3854.537 kb on - strandat 3854.572 kb on - strandat 3854.603 kb on - strandat 3854.662 kb on - strandat 3854.662 kb on - strandat 3854.749 kb on - strand, within ECD_03658at 3854.750 kb on + strand, within ECD_03658at 3854.750 kb on + strand, within ECD_03658at 3854.750 kb on + strand, within ECD_03658at 3854.750 kb on + strand, within ECD_03658at 3854.750 kb on + strand, within ECD_03658at 3854.750 kb on + strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.751 kb on - strand, within ECD_03658at 3854.761 kb on - strand, within ECD_03658at 3854.761 kb on - strand, within ECD_03658at 3854.780 kb on + strand, within ECD_03658at 3854.781 kb on - strand, within ECD_03658at 3854.781 kb on - strand, within ECD_03658at 3854.781 kb on - strand, within ECD_03658at 3854.802 kb on + strand, within ECD_03658at 3854.802 kb on + strand, within ECD_03658at 3854.802 kb on + strand, within ECD_03658at 3854.833 kb on - strand, within ECD_03658at 3854.842 kb on - strand, within ECD_03658at 3854.852 kb on + strand, within ECD_03658at 3854.873 kb on - strand, within ECD_03658at 3854.879 kb on + strand, within ECD_03658at 3854.880 kb on - strand, within ECD_03658at 3854.880 kb on - strand, within ECD_03658at 3854.884 kb on - strand, within ECD_03658at 3854.908 kb on - strand, within ECD_03658at 3854.908 kb on - strand, within ECD_03658at 3855.078 kb on + strand, within ECD_03658at 3855.079 kb on - strand, within ECD_03658at 3855.154 kb on - strand, within ECD_03658at 3855.154 kb on - strand, within ECD_03658at 3855.178 kb on - strand, within ECD_03658at 3855.181 kb on - strand, within ECD_03658at 3855.182 kb on - strand, within ECD_03658at 3855.216 kb on + strand, within ECD_03658at 3855.216 kb on + strand, within ECD_03658at 3855.217 kb on - strand, within ECD_03658at 3855.218 kb on + strand, within ECD_03658at 3855.219 kb on - strand, within ECD_03658at 3855.219 kb on - strand, within ECD_03658at 3855.342 kb on + strand, within ECD_03658at 3855.342 kb on + strand, within ECD_03658at 3855.343 kb on - strand, within ECD_03658at 3855.343 kb on - strand, within ECD_03658at 3855.359 kb on + strand, within ECD_03658at 3855.359 kb on + strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.412 kb on - strand, within ECD_03658at 3855.428 kb on + strand, within ECD_03658at 3855.428 kb on + strand, within ECD_03658at 3855.428 kb on + strand, within ECD_03658at 3855.429 kb on - strand, within ECD_03658at 3855.429 kb on - strand, within ECD_03658at 3855.429 kb on - strand, within ECD_03658at 3855.436 kb on + strand, within ECD_03658at 3855.437 kb on - strand, within ECD_03658

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
3,852,981 + -0.1
3,852,982 - -0.0
3,852,982 - +0.6
3,852,982 - +0.1
3,852,982 - -0.3
3,853,015 + -0.6
3,853,015 + -0.2
3,853,015 + -0.9
3,853,015 + +0.4
3,853,015 + -0.2
3,853,016 - -0.3
3,853,016 - -0.0
3,853,016 - +0.3
3,853,016 - -0.1
3,853,016 - -0.2
3,853,016 - +0.4
3,853,119 + -2.0
3,853,120 - -0.7
3,853,120 - -0.4
3,853,326 - ECD_03657 0.23 -1.0
3,853,336 + ECD_03657 0.24 -1.0
3,853,503 - ECD_03657 0.35 -0.6
3,853,511 + ECD_03657 0.35 +0.8
3,853,512 - ECD_03657 0.35 -1.2
3,853,512 - ECD_03657 0.35 -0.8
3,853,526 + ECD_03657 0.36 -0.7
3,853,529 + ECD_03657 0.36 -0.5
3,853,529 + ECD_03657 0.36 -0.0
3,853,566 - ECD_03657 0.39 +1.2
3,853,577 + ECD_03657 0.40 -1.6
3,853,577 + ECD_03657 0.40 -0.2
3,853,578 - ECD_03657 0.40 -0.7
3,853,578 - ECD_03657 0.40 -0.5
3,853,578 - ECD_03657 0.40 +0.0
3,853,578 - ECD_03657 0.40 -2.1
3,853,622 + ECD_03657 0.43 -0.5
3,853,623 - ECD_03657 0.43 -0.3
3,853,683 + ECD_03657 0.47 -1.0
3,853,683 + ECD_03657 0.47 -2.9
3,853,779 - ECD_03657 0.53 -0.3
3,853,867 + ECD_03657 0.59 -0.2
3,853,872 + ECD_03657 0.60 -0.9
3,853,872 + ECD_03657 0.60 -1.3
3,853,873 - ECD_03657 0.60 -0.2
3,854,056 - ECD_03657 0.72 -1.3
3,854,057 + ECD_03657 0.72 -0.3
3,854,058 - ECD_03657 0.72 +0.2
3,854,111 - ECD_03657 0.76 -0.6
3,854,211 + ECD_03657 0.82 -1.4
3,854,212 - ECD_03657 0.82 -0.1
3,854,253 - ECD_03657 0.85 -0.7
3,854,312 + ECD_03657 0.89 -1.1
3,854,313 - ECD_03657 0.89 -0.3
3,854,450 - +0.7
3,854,450 - -0.6
3,854,471 + +0.6
3,854,529 - +0.6
3,854,529 - +0.3
3,854,529 - +0.0
3,854,529 - +0.1
3,854,531 + -0.7
3,854,531 + -0.0
3,854,531 + -0.4
3,854,532 - +0.2
3,854,532 - -0.4
3,854,532 - +2.0
3,854,532 - +0.3
3,854,532 - +0.1
3,854,532 - -0.0
3,854,532 - +0.4
3,854,537 - +0.2
3,854,537 - +0.3
3,854,537 - +0.1
3,854,537 - +0.0
3,854,537 - -0.2
3,854,572 - +0.4
3,854,603 - -0.5
3,854,662 - +0.2
3,854,662 - -0.3
3,854,749 - ECD_03658 0.11 -0.7
3,854,750 + ECD_03658 0.11 -1.1
3,854,750 + ECD_03658 0.11 -0.1
3,854,750 + ECD_03658 0.11 -0.9
3,854,750 + ECD_03658 0.11 +0.5
3,854,750 + ECD_03658 0.11 -0.4
3,854,750 + ECD_03658 0.11 -0.1
3,854,751 - ECD_03658 0.12 +0.1
3,854,751 - ECD_03658 0.12 -1.3
3,854,751 - ECD_03658 0.12 -0.2
3,854,751 - ECD_03658 0.12 -0.1
3,854,751 - ECD_03658 0.12 -0.9
3,854,751 - ECD_03658 0.12 -0.2
3,854,751 - ECD_03658 0.12 -0.1
3,854,751 - ECD_03658 0.12 -0.7
3,854,751 - ECD_03658 0.12 -0.1
3,854,761 - ECD_03658 0.12 +0.1
3,854,761 - ECD_03658 0.12 -0.1
3,854,780 + ECD_03658 0.14 -0.2
3,854,781 - ECD_03658 0.14 -0.4
3,854,781 - ECD_03658 0.14 -0.1
3,854,781 - ECD_03658 0.14 -0.5
3,854,802 + ECD_03658 0.16 +0.0
3,854,802 + ECD_03658 0.16 -0.8
3,854,802 + ECD_03658 0.16 +0.0
3,854,833 - ECD_03658 0.18 -0.8
3,854,842 - ECD_03658 0.19 -0.2
3,854,852 + ECD_03658 0.20 -0.3
3,854,873 - ECD_03658 0.21 +0.1
3,854,879 + ECD_03658 0.22 -0.4
3,854,880 - ECD_03658 0.22 +0.1
3,854,880 - ECD_03658 0.22 -0.3
3,854,884 - ECD_03658 0.22 +0.1
3,854,908 - ECD_03658 0.24 -0.6
3,854,908 - ECD_03658 0.24 -0.1
3,855,078 + ECD_03658 0.37 -2.1
3,855,079 - ECD_03658 0.37 -0.8
3,855,154 - ECD_03658 0.43 -0.7
3,855,154 - ECD_03658 0.43 -0.6
3,855,178 - ECD_03658 0.45 -0.4
3,855,181 - ECD_03658 0.45 -1.1
3,855,182 - ECD_03658 0.46 +0.2
3,855,216 + ECD_03658 0.48 +0.6
3,855,216 + ECD_03658 0.48 -0.2
3,855,217 - ECD_03658 0.48 -0.4
3,855,218 + ECD_03658 0.48 -1.4
3,855,219 - ECD_03658 0.48 +0.1
3,855,219 - ECD_03658 0.48 -0.8
3,855,342 + ECD_03658 0.58 -0.2
3,855,342 + ECD_03658 0.58 +0.3
3,855,343 - ECD_03658 0.58 -0.4
3,855,343 - ECD_03658 0.58 -0.0
3,855,359 + ECD_03658 0.60 +1.4
3,855,359 + ECD_03658 0.60 -0.2
3,855,360 - ECD_03658 0.60 -0.3
3,855,360 - ECD_03658 0.60 +0.3
3,855,360 - ECD_03658 0.60 -0.2
3,855,360 - ECD_03658 0.60 -0.4
3,855,360 - ECD_03658 0.60 -0.2
3,855,411 + ECD_03658 0.64 -0.2
3,855,411 + ECD_03658 0.64 +0.2
3,855,411 + ECD_03658 0.64 -0.3
3,855,411 + ECD_03658 0.64 -0.1
3,855,411 + ECD_03658 0.64 -0.0
3,855,412 - ECD_03658 0.64 -0.3
3,855,428 + ECD_03658 0.65 -2.4
3,855,428 + ECD_03658 0.65 +0.0
3,855,428 + ECD_03658 0.65 +0.3
3,855,429 - ECD_03658 0.65 +0.0
3,855,429 - ECD_03658 0.65 +0.0
3,855,429 - ECD_03658 0.65 +0.6
3,855,436 + ECD_03658 0.66 +0.5
3,855,437 - ECD_03658 0.66 -0.2

Or see this region's nucleotide sequence