Strain Fitness in Escherichia coli BL21 around ECD_03650

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03649 and ECD_03650 are separated by 2 nucleotidesECD_03650 and ECD_03651 are separated by 51 nucleotides ECD_03649: ECD_03649 - dihydroxyacid dehydratase, at 3,843,720 to 3,845,570 _03649 ECD_03650: ECD_03650 - l-threonine dehydratase, biosynthetic; also known as threonine deaminase, at 3,845,573 to 3,847,117 _03650 ECD_03651: ECD_03651 - transcriptional activator of ilvC; autorepressor, at 3,847,169 to 3,848,062 _03651 Position (kb) 3845 3846 3847 3848Strain fitness (log2 ratio) -3 -2 -1 0 1at 3844.626 kb on - strand, within ECD_03649at 3844.655 kb on + strand, within ECD_03649at 3844.680 kb on + strand, within ECD_03649at 3844.680 kb on + strand, within ECD_03649at 3844.681 kb on - strand, within ECD_03649at 3844.681 kb on - strand, within ECD_03649at 3844.681 kb on - strand, within ECD_03649at 3844.775 kb on - strand, within ECD_03649at 3844.775 kb on - strand, within ECD_03649at 3844.775 kb on - strand, within ECD_03649at 3844.809 kb on + strand, within ECD_03649at 3844.810 kb on - strand, within ECD_03649at 3844.810 kb on - strand, within ECD_03649at 3844.817 kb on + strand, within ECD_03649at 3844.965 kb on + strand, within ECD_03649at 3844.966 kb on - strand, within ECD_03649at 3844.966 kb on - strand, within ECD_03649at 3844.966 kb on - strand, within ECD_03649at 3844.995 kb on + strand, within ECD_03649at 3844.996 kb on - strand, within ECD_03649at 3845.000 kb on + strand, within ECD_03649at 3845.000 kb on + strand, within ECD_03649at 3845.001 kb on - strand, within ECD_03649at 3845.001 kb on - strand, within ECD_03649at 3845.146 kb on + strand, within ECD_03649at 3845.146 kb on + strand, within ECD_03649at 3845.158 kb on - strand, within ECD_03649at 3845.357 kb on + strand, within ECD_03649at 3845.358 kb on - strand, within ECD_03649at 3845.358 kb on - strand, within ECD_03649at 3845.384 kb on + strand, within ECD_03649at 3845.392 kb on + strandat 3845.398 kb on + strandat 3845.398 kb on + strandat 3845.399 kb on - strandat 3845.618 kb on + strandat 3845.618 kb on + strandat 3845.619 kb on - strandat 3845.622 kb on + strandat 3845.622 kb on + strandat 3845.623 kb on - strandat 3845.649 kb on - strandat 3845.772 kb on - strand, within ECD_03650at 3846.276 kb on + strand, within ECD_03650at 3846.303 kb on + strand, within ECD_03650at 3846.334 kb on - strand, within ECD_03650at 3846.344 kb on + strand, within ECD_03650at 3846.403 kb on - strand, within ECD_03650at 3846.468 kb on - strand, within ECD_03650at 3846.508 kb on + strand, within ECD_03650at 3846.508 kb on + strand, within ECD_03650at 3846.677 kb on + strand, within ECD_03650at 3846.677 kb on + strand, within ECD_03650at 3846.678 kb on - strand, within ECD_03650at 3846.822 kb on + strand, within ECD_03650at 3846.823 kb on - strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.833 kb on + strand, within ECD_03650at 3846.835 kb on + strand, within ECD_03650at 3846.835 kb on + strand, within ECD_03650at 3846.878 kb on + strand, within ECD_03650at 3846.937 kb on + strand, within ECD_03650at 3846.937 kb on + strand, within ECD_03650at 3846.941 kb on + strand, within ECD_03650at 3846.941 kb on + strand, within ECD_03650at 3846.941 kb on + strand, within ECD_03650at 3846.942 kb on - strand, within ECD_03650at 3846.942 kb on - strand, within ECD_03650at 3846.942 kb on - strand, within ECD_03650at 3847.062 kb on - strandat 3847.145 kb on - strandat 3847.480 kb on + strand, within ECD_03651at 3847.484 kb on - strand, within ECD_03651at 3847.566 kb on - strand, within ECD_03651at 3847.687 kb on + strand, within ECD_03651at 3847.687 kb on + strand, within ECD_03651at 3847.690 kb on + strand, within ECD_03651at 3847.690 kb on + strand, within ECD_03651at 3847.691 kb on - strand, within ECD_03651at 3847.691 kb on - strand, within ECD_03651at 3847.691 kb on - strand, within ECD_03651at 3847.697 kb on - strand, within ECD_03651at 3847.697 kb on - strand, within ECD_03651at 3847.755 kb on + strand, within ECD_03651at 3847.780 kb on + strand, within ECD_03651at 3847.781 kb on - strand, within ECD_03651at 3847.781 kb on - strand, within ECD_03651at 3847.781 kb on - strand, within ECD_03651at 3847.784 kb on + strand, within ECD_03651at 3847.784 kb on + strand, within ECD_03651at 3847.785 kb on - strand, within ECD_03651at 3847.785 kb on - strand, within ECD_03651at 3847.785 kb on - strand, within ECD_03651

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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3,844,626 - ECD_03649 0.49 -2.0
3,844,655 + ECD_03649 0.51 -0.9
3,844,680 + ECD_03649 0.52 -1.9
3,844,680 + ECD_03649 0.52 -2.1
3,844,681 - ECD_03649 0.52 -1.8
3,844,681 - ECD_03649 0.52 -1.4
3,844,681 - ECD_03649 0.52 -1.6
3,844,775 - ECD_03649 0.57 -1.9
3,844,775 - ECD_03649 0.57 -0.5
3,844,775 - ECD_03649 0.57 -1.9
3,844,809 + ECD_03649 0.59 -2.0
3,844,810 - ECD_03649 0.59 -1.2
3,844,810 - ECD_03649 0.59 -1.3
3,844,817 + ECD_03649 0.59 -1.1
3,844,965 + ECD_03649 0.67 -1.3
3,844,966 - ECD_03649 0.67 -0.9
3,844,966 - ECD_03649 0.67 -1.2
3,844,966 - ECD_03649 0.67 -1.5
3,844,995 + ECD_03649 0.69 -2.6
3,844,996 - ECD_03649 0.69 -1.6
3,845,000 + ECD_03649 0.69 -1.4
3,845,000 + ECD_03649 0.69 -1.3
3,845,001 - ECD_03649 0.69 -1.6
3,845,001 - ECD_03649 0.69 -1.7
3,845,146 + ECD_03649 0.77 -1.5
3,845,146 + ECD_03649 0.77 -1.3
3,845,158 - ECD_03649 0.78 -0.7
3,845,357 + ECD_03649 0.88 -3.6
3,845,358 - ECD_03649 0.88 -1.8
3,845,358 - ECD_03649 0.88 -3.0
3,845,384 + ECD_03649 0.90 -1.1
3,845,392 + -1.2
3,845,398 + -0.7
3,845,398 + -2.9
3,845,399 - -1.2
3,845,618 + -2.4
3,845,618 + -1.0
3,845,619 - -1.7
3,845,622 + -1.8
3,845,622 + -1.0
3,845,623 - -1.2
3,845,649 - -0.7
3,845,772 - ECD_03650 0.13 -1.2
3,846,276 + ECD_03650 0.46 -1.7
3,846,303 + ECD_03650 0.47 -0.6
3,846,334 - ECD_03650 0.49 +0.3
3,846,344 + ECD_03650 0.50 -1.2
3,846,403 - ECD_03650 0.54 -0.2
3,846,468 - ECD_03650 0.58 -1.6
3,846,508 + ECD_03650 0.61 -1.3
3,846,508 + ECD_03650 0.61 -1.1
3,846,677 + ECD_03650 0.71 -1.4
3,846,677 + ECD_03650 0.71 -1.6
3,846,678 - ECD_03650 0.72 -2.4
3,846,822 + ECD_03650 0.81 -0.6
3,846,823 - ECD_03650 0.81 -0.7
3,846,833 + ECD_03650 0.82 -3.1
3,846,833 + ECD_03650 0.82 -1.0
3,846,833 + ECD_03650 0.82 -1.6
3,846,833 + ECD_03650 0.82 -1.6
3,846,833 + ECD_03650 0.82 -1.2
3,846,835 + ECD_03650 0.82 -2.0
3,846,835 + ECD_03650 0.82 -2.3
3,846,878 + ECD_03650 0.84 -1.2
3,846,937 + ECD_03650 0.88 -2.0
3,846,937 + ECD_03650 0.88 -1.4
3,846,941 + ECD_03650 0.89 -1.8
3,846,941 + ECD_03650 0.89 -2.1
3,846,941 + ECD_03650 0.89 -0.3
3,846,942 - ECD_03650 0.89 -0.3
3,846,942 - ECD_03650 0.89 -1.3
3,846,942 - ECD_03650 0.89 -1.0
3,847,062 - -1.5
3,847,145 - -0.3
3,847,480 + ECD_03651 0.35 -0.4
3,847,484 - ECD_03651 0.35 -0.8
3,847,566 - ECD_03651 0.44 -0.0
3,847,687 + ECD_03651 0.58 -0.4
3,847,687 + ECD_03651 0.58 -0.9
3,847,690 + ECD_03651 0.58 -0.7
3,847,690 + ECD_03651 0.58 +0.2
3,847,691 - ECD_03651 0.58 -0.1
3,847,691 - ECD_03651 0.58 +0.1
3,847,691 - ECD_03651 0.58 +0.6
3,847,697 - ECD_03651 0.59 -0.2
3,847,697 - ECD_03651 0.59 -0.9
3,847,755 + ECD_03651 0.66 -0.2
3,847,780 + ECD_03651 0.68 -0.2
3,847,781 - ECD_03651 0.68 -0.3
3,847,781 - ECD_03651 0.68 -0.5
3,847,781 - ECD_03651 0.68 -0.4
3,847,784 + ECD_03651 0.69 +1.0
3,847,784 + ECD_03651 0.69 -0.0
3,847,785 - ECD_03651 0.69 -1.0
3,847,785 - ECD_03651 0.69 -0.0
3,847,785 - ECD_03651 0.69 -0.5

Or see this region's nucleotide sequence