Strain Fitness in Escherichia coli BL21 around ECD_03648

Experiment: Mixed culture, Halobacteriovorax-10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-10
3,841,728	+		ECD_03646	0.56	-0.2
3,841,729	-		ECD_03646	0.56	-1.0
3,841,729	-		ECD_03646	0.56	-1.1
3,841,729	-		ECD_03646	0.56	-1.1
3,841,729	-		ECD_03646	0.56	+0.2
3,841,729	-		ECD_03646	0.56	-0.9
3,841,729	-		ECD_03646	0.56	+0.1
3,841,740	+		ECD_03646	0.57	-0.4
3,841,740	+		ECD_03646	0.57	-0.4
3,841,761	+		ECD_03646	0.58	-0.2
3,841,762	-		ECD_03646	0.58	-0.8
3,841,762	-		ECD_03646	0.58	-0.0
3,841,762	-		ECD_03646	0.58	-0.3
3,841,774	-		ECD_03646	0.59	-0.5
3,841,778	-		ECD_03646	0.59	+0.0
3,841,794	+		ECD_03646	0.60	-0.5
3,841,795	-		ECD_03646	0.60	+0.8
3,841,852	+		ECD_03646	0.64	-0.5
3,841,852	+		ECD_03646	0.64	+0.5
3,841,856	+		ECD_03646	0.64	-0.1
3,841,856	+		ECD_03646	0.64	+0.0
3,841,856	+		ECD_03646	0.64	+0.2
3,841,857	-		ECD_03646	0.64	-1.1
3,841,857	-		ECD_03646	0.64	+0.6
3,841,857	-		ECD_03646	0.64	+0.5
3,841,872	+		ECD_03646	0.65	+0.1
3,841,998	+		ECD_03646	0.73	-0.5
3,842,019	+		ECD_03646	0.74	+0.6
3,842,071	+		ECD_03646	0.77	-0.7
3,842,137	-		ECD_03646	0.81	+0.1
3,842,137	-		ECD_03646	0.81	-0.7
3,842,154	+		ECD_03646	0.82	-0.8
3,842,155	-		ECD_03646	0.82	-0.8
3,842,219	-		ECD_03646	0.86	-0.2
3,842,219	-		ECD_03646	0.86	-0.7
3,842,259	+		ECD_03646	0.89	+0.1
3,842,416	+				+0.4
3,842,416	+				-0.1
3,842,440	-				-0.4
3,842,465	+				+0.9
3,842,465	+				-0.3
3,842,466	-				-0.6
3,842,466	-				-1.3
3,842,466	-				-0.7
3,842,466	-				-0.5
3,842,492	+		ECD_03647	0.19	-0.0
3,842,493	-		ECD_03647	0.19	-0.6
3,842,547	+		ECD_03647	0.39	+0.0
3,842,548	-		ECD_03647	0.40	-0.1
3,842,575	-		ECD_03647	0.50	-0.4
3,842,576	+		ECD_03647	0.50	-0.3
3,842,577	-		ECD_03647	0.51	-0.8
3,842,619	-		ECD_03647	0.67	-1.2
3,842,619	-		ECD_03647	0.67	-1.8
3,842,633	+		ECD_03647	0.72	+0.2
3,842,633	+		ECD_03647	0.72	-0.6
3,842,634	-		ECD_03647	0.72	-1.4
3,842,637	+		ECD_03647	0.73	+0.2
3,842,638	-		ECD_03647	0.74	-0.9
3,842,720	-				-1.2
3,842,721	+				-0.4
3,842,747	+				-1.6
3,842,852	+		ECD_03648	0.14	-1.3
3,842,896	+		ECD_03648	0.18	-1.3
3,842,897	-		ECD_03648	0.18	-1.6
3,842,897	-		ECD_03648	0.18	-1.5
3,842,897	-		ECD_03648	0.18	-1.3
3,842,927	+		ECD_03648	0.22	-1.2
3,843,011	+		ECD_03648	0.31	-1.5
3,843,011	+		ECD_03648	0.31	-2.0
3,843,011	+		ECD_03648	0.31	-1.6
3,843,011	+		ECD_03648	0.31	-2.3
3,843,012	-		ECD_03648	0.31	-0.9
3,843,012	-		ECD_03648	0.31	-1.8
3,843,054	+		ECD_03648	0.35	-0.9
3,843,113	+		ECD_03648	0.42	-0.4
3,843,113	+		ECD_03648	0.42	-1.5
3,843,114	-		ECD_03648	0.42	-2.0
3,843,114	-		ECD_03648	0.42	-1.4
3,843,214	+		ECD_03648	0.52	-1.3
3,843,214	+		ECD_03648	0.52	-1.8
3,843,214	+		ECD_03648	0.52	-1.5
3,843,214	+		ECD_03648	0.52	-1.8
3,843,215	-		ECD_03648	0.53	-1.6
3,843,218	+		ECD_03648	0.53	-1.5
3,843,218	+		ECD_03648	0.53	-1.9
3,843,218	+		ECD_03648	0.53	-0.8
3,843,218	+		ECD_03648	0.53	-1.8
3,843,218	+		ECD_03648	0.53	-1.1
3,843,218	+		ECD_03648	0.53	-1.6
3,843,219	-		ECD_03648	0.53	-2.2
3,843,219	-		ECD_03648	0.53	-1.9
3,843,296	+		ECD_03648	0.61	-1.5
3,843,296	+		ECD_03648	0.61	-1.8
3,843,297	-		ECD_03648	0.61	-0.5
3,843,298	+		ECD_03648	0.62	-0.9
3,843,298	+		ECD_03648	0.62	-1.4
3,843,299	-		ECD_03648	0.62	-1.3
3,843,299	-		ECD_03648	0.62	-1.8
3,843,299	-		ECD_03648	0.62	-1.1
3,843,385	+		ECD_03648	0.71	-0.6
3,843,386	-		ECD_03648	0.71	-1.3
3,843,487	+		ECD_03648	0.82	-0.8
3,843,528	+		ECD_03648	0.86	-2.0
3,843,528	+		ECD_03648	0.86	-1.6
3,843,528	+		ECD_03648	0.86	-1.3
3,843,528	+		ECD_03648	0.86	-1.7
3,843,528	+		ECD_03648	0.86	-1.0
3,843,528	+		ECD_03648	0.86	-1.3
3,843,528	+		ECD_03648	0.86	-1.0
3,843,529	-		ECD_03648	0.86	-2.2
3,843,529	-		ECD_03648	0.86	-1.6
3,843,529	-		ECD_03648	0.86	-1.1
3,843,529	-		ECD_03648	0.86	-1.5
3,843,529	-		ECD_03648	0.86	-2.0
3,843,536	-		ECD_03648	0.87	-1.5
3,843,636	+				-0.1
3,843,646	+				+0.1
3,843,647	-				-1.3
3,843,653	+				+0.7
3,843,690	+				-0.2
3,843,690	+				+0.1
3,843,691	-				-2.0
3,843,714	+				-0.9
3,843,714	+				-0.3
3,843,714	+				-0.9
3,843,714	+				-1.3
3,843,715	-				-0.9
3,843,715	-				-1.5
3,843,715	-				-1.4
3,843,715	-				-2.0
3,843,719	+				-1.0
3,843,719	+				-0.9
3,843,719	+				-1.1
3,843,725	+				-1.3
3,843,725	+				-1.6
3,843,726	-				-1.6
3,843,726	-				-1.9
3,843,726	-				-1.9
3,843,729	+				-1.5
3,843,758	+				-1.4
3,843,759	-				-1.2
3,843,993	+		ECD_03649	0.15	-1.9
3,843,994	-		ECD_03649	0.15	-1.6
3,843,994	-		ECD_03649	0.15	-0.8
3,843,994	-		ECD_03649	0.15	-0.7
3,844,035	+		ECD_03649	0.17	-1.3
3,844,036	-		ECD_03649	0.17	-1.2
3,844,036	-		ECD_03649	0.17	-1.0
3,844,036	-		ECD_03649	0.17	-1.2
3,844,037	+		ECD_03649	0.17	-1.8
3,844,037	+		ECD_03649	0.17	-1.5
3,844,037	+		ECD_03649	0.17	-1.6
3,844,037	+		ECD_03649	0.17	-2.1
3,844,038	-		ECD_03649	0.17	-0.5
3,844,038	-		ECD_03649	0.17	-1.8
3,844,038	-		ECD_03649	0.17	-1.7
3,844,038	-		ECD_03649	0.17	-1.4
3,844,038	-		ECD_03649	0.17	-1.2
3,844,073	+		ECD_03649	0.19	-0.9
3,844,127	-		ECD_03649	0.22	+0.6
3,844,130	+		ECD_03649	0.22	-1.2
3,844,131	-		ECD_03649	0.22	-0.3
3,844,403	+		ECD_03649	0.37	-1.8
3,844,419	-		ECD_03649	0.38	-1.7
3,844,458	+		ECD_03649	0.40	-1.6
3,844,459	-		ECD_03649	0.40	-1.6
3,844,459	-		ECD_03649	0.40	-2.1
3,844,556	+		ECD_03649	0.45	-0.1
3,844,556	+		ECD_03649	0.45	-1.7
3,844,564	+		ECD_03649	0.46	-2.0
3,844,564	+		ECD_03649	0.46	-1.3
3,844,565	-		ECD_03649	0.46	-2.4
3,844,626	-		ECD_03649	0.49	-2.0
3,844,655	+		ECD_03649	0.51	-0.9