Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03589 and ECD_03590 are separated by 105 nucleotides ECD_03590 and ECD_03591 are separated by 242 nucleotides ECD_03591 and ECD_03592 are separated by 220 nucleotides
ECD_03589: ECD_03589 - membrane protein insertase, at 3,773,872 to 3,775,518
_03589
ECD_03590: ECD_03590 - tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase, at 3,775,624 to 3,776,988
_03590
ECD_03591: ECD_03591 - tryptophanase leader peptide, at 3,777,231 to 3,777,305
_03591
ECD_03592: ECD_03592 - tryptophanase/L-cysteine desulfhydrase, PLP-dependent, at 3,777,526 to 3,778,941
_03592
Position (kb)
3775
3776
3777 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3775.540 kb on + strand at 3775.642 kb on - strand at 3775.743 kb on - strand at 3775.743 kb on - strand at 3775.743 kb on - strand at 3775.743 kb on - strand at 3775.746 kb on + strand at 3775.905 kb on - strand, within ECD_03590 at 3776.059 kb on - strand, within ECD_03590 at 3776.059 kb on - strand, within ECD_03590 at 3776.128 kb on + strand, within ECD_03590 at 3776.628 kb on + strand, within ECD_03590 at 3776.802 kb on - strand, within ECD_03590 at 3776.802 kb on - strand, within ECD_03590 at 3776.842 kb on - strand, within ECD_03590 at 3776.912 kb on + strand at 3776.977 kb on - strand at 3776.982 kb on + strand at 3776.996 kb on + strand at 3776.997 kb on - strand at 3777.282 kb on - strand, within ECD_03591 at 3777.446 kb on + strand at 3777.589 kb on - strand at 3777.618 kb on + strand at 3777.622 kb on - strand at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.712 kb on - strand, within ECD_03592 at 3777.763 kb on + strand, within ECD_03592 at 3777.802 kb on + strand, within ECD_03592 at 3777.808 kb on + strand, within ECD_03592 at 3777.809 kb on - strand, within ECD_03592 at 3777.809 kb on - strand, within ECD_03592 at 3777.851 kb on - strand, within ECD_03592 at 3777.851 kb on - strand, within ECD_03592 at 3777.853 kb on - strand, within ECD_03592 at 3777.926 kb on - strand, within ECD_03592 at 3777.985 kb on + strand, within ECD_03592
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,775,540 + -0.6 3,775,642 - -0.6 3,775,743 - -2.2 3,775,743 - -3.0 3,775,743 - -2.0 3,775,743 - -2.2 3,775,746 + -0.7 3,775,905 - ECD_03590 0.21 -2.0 3,776,059 - ECD_03590 0.32 -0.6 3,776,059 - ECD_03590 0.32 -0.9 3,776,128 + ECD_03590 0.37 -1.0 3,776,628 + ECD_03590 0.74 -1.4 3,776,802 - ECD_03590 0.86 -2.3 3,776,802 - ECD_03590 0.86 -0.4 3,776,842 - ECD_03590 0.89 -2.0 3,776,912 + -2.0 3,776,977 - -2.2 3,776,982 + -2.3 3,776,996 + -0.1 3,776,997 - +0.2 3,777,282 - ECD_03591 0.68 +0.1 3,777,446 + +0.5 3,777,589 - -0.2 3,777,618 + -0.2 3,777,622 - +0.3 3,777,712 - ECD_03592 0.13 -0.0 3,777,712 - ECD_03592 0.13 +0.5 3,777,712 - ECD_03592 0.13 -0.2 3,777,712 - ECD_03592 0.13 +0.0 3,777,712 - ECD_03592 0.13 -0.7 3,777,763 + ECD_03592 0.17 +0.2 3,777,802 + ECD_03592 0.19 +0.3 3,777,808 + ECD_03592 0.20 +0.6 3,777,809 - ECD_03592 0.20 +0.4 3,777,809 - ECD_03592 0.20 +0.2 3,777,851 - ECD_03592 0.23 +0.6 3,777,851 - ECD_03592 0.23 +0.6 3,777,853 - ECD_03592 0.23 -0.1 3,777,926 - ECD_03592 0.28 +0.0 3,777,985 + ECD_03592 0.32 +0.0
Or see this region's nucleotide sequence