Strain Fitness in Escherichia coli BL21 around ECD_03506

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03504 and ECD_03505 are separated by 257 nucleotidesECD_03505 and ECD_03506 are separated by 54 nucleotidesECD_03506 and ECD_03507 are separated by 18 nucleotides ECD_03504: ECD_03504 - DNA ligase, NAD(+)-dependent, at 3,686,280 to 3,687,962 _03504 ECD_03505: ECD_03505 - guanylate kinase, at 3,688,220 to 3,688,843 _03505 ECD_03506: ECD_03506 - RNA polymerase, omega subunit, at 3,688,898 to 3,689,173 _03506 ECD_03507: ECD_03507 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 3,689,192 to 3,691,300 _03507 Position (kb) 3688 3689 3690Strain fitness (log2 ratio) -2 -1 0 1at 3687.932 kb on + strandat 3687.932 kb on + strandat 3687.932 kb on + strandat 3687.932 kb on + strandat 3687.933 kb on - strandat 3687.933 kb on - strandat 3687.933 kb on - strandat 3687.936 kb on + strandat 3687.936 kb on + strandat 3687.936 kb on + strandat 3687.937 kb on - strandat 3687.937 kb on - strandat 3687.939 kb on + strandat 3687.939 kb on + strandat 3687.939 kb on + strandat 3687.939 kb on + strandat 3687.940 kb on - strandat 3687.940 kb on - strandat 3687.954 kb on + strandat 3687.954 kb on + strandat 3687.955 kb on - strandat 3687.955 kb on - strandat 3687.955 kb on - strandat 3687.977 kb on + strandat 3687.977 kb on + strandat 3687.977 kb on + strandat 3687.993 kb on + strandat 3687.994 kb on - strandat 3687.995 kb on + strandat 3687.995 kb on + strandat 3687.995 kb on + strandat 3687.995 kb on + strandat 3687.995 kb on + strandat 3687.995 kb on + strandat 3687.996 kb on - strandat 3687.996 kb on - strandat 3687.996 kb on - strandat 3687.996 kb on - strandat 3687.996 kb on - strandat 3687.996 kb on - strandat 3687.996 kb on - strandat 3688.065 kb on + strandat 3688.145 kb on - strandat 3688.145 kb on - strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.179 kb on + strandat 3688.183 kb on + strandat 3688.183 kb on + strandat 3688.206 kb on + strandat 3688.893 kb on + strandat 3688.893 kb on + strandat 3688.897 kb on + strandat 3688.908 kb on + strandat 3689.040 kb on + strand, within ECD_03506at 3689.040 kb on + strand, within ECD_03506at 3689.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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3,687,932 + +0.9
3,687,932 + -0.2
3,687,932 + +0.4
3,687,932 + -0.4
3,687,933 - -0.1
3,687,933 - -0.4
3,687,933 - -0.0
3,687,936 + -0.1
3,687,936 + -0.0
3,687,936 + -0.1
3,687,937 - +0.1
3,687,937 - +0.1
3,687,939 + -0.2
3,687,939 + +0.1
3,687,939 + -0.1
3,687,939 + -0.1
3,687,940 - +0.3
3,687,940 - +0.6
3,687,954 + -0.4
3,687,954 + -1.0
3,687,955 - +0.1
3,687,955 - +0.9
3,687,955 - -0.1
3,687,977 + +0.3
3,687,977 + +0.3
3,687,977 + +0.2
3,687,993 + -0.1
3,687,994 - +0.1
3,687,995 + +0.1
3,687,995 + +0.1
3,687,995 + -0.1
3,687,995 + -0.3
3,687,995 + +0.3
3,687,995 + +0.2
3,687,996 - +0.3
3,687,996 - -0.0
3,687,996 - +0.8
3,687,996 - +0.1
3,687,996 - +0.0
3,687,996 - +0.2
3,687,996 - +0.1
3,688,065 + +0.1
3,688,145 - +0.1
3,688,145 - -0.1
3,688,179 + -0.4
3,688,179 + -0.2
3,688,179 + +0.1
3,688,179 + -0.2
3,688,179 + +0.1
3,688,179 + +0.0
3,688,179 + +0.3
3,688,179 + -0.0
3,688,183 + -0.2
3,688,183 + +0.2
3,688,206 + +0.2
3,688,893 + -1.6
3,688,893 + -1.8
3,688,897 + -1.5
3,688,908 + -0.9
3,689,040 + ECD_03506 0.51 -1.2
3,689,040 + ECD_03506 0.51 -1.4
3,689,152 + -0.4

Or see this region's nucleotide sequence