Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03504 and ECD_03505 are separated by 257 nucleotides ECD_03505 and ECD_03506 are separated by 54 nucleotides ECD_03506 and ECD_03507 are separated by 18 nucleotides
ECD_03504: ECD_03504 - DNA ligase, NAD(+)-dependent, at 3,686,280 to 3,687,962
_03504
ECD_03505: ECD_03505 - guanylate kinase, at 3,688,220 to 3,688,843
_03505
ECD_03506: ECD_03506 - RNA polymerase, omega subunit, at 3,688,898 to 3,689,173
_03506
ECD_03507: ECD_03507 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 3,689,192 to 3,691,300
_03507
Position (kb)
3688
3689
3690 Strain fitness (log2 ratio)
-2
-1
0
1 at 3687.932 kb on + strand at 3687.932 kb on + strand at 3687.932 kb on + strand at 3687.932 kb on + strand at 3687.933 kb on - strand at 3687.933 kb on - strand at 3687.933 kb on - strand at 3687.936 kb on + strand at 3687.936 kb on + strand at 3687.936 kb on + strand at 3687.937 kb on - strand at 3687.937 kb on - strand at 3687.939 kb on + strand at 3687.939 kb on + strand at 3687.939 kb on + strand at 3687.939 kb on + strand at 3687.940 kb on - strand at 3687.940 kb on - strand at 3687.954 kb on + strand at 3687.954 kb on + strand at 3687.955 kb on - strand at 3687.955 kb on - strand at 3687.955 kb on - strand at 3687.977 kb on + strand at 3687.977 kb on + strand at 3687.977 kb on + strand at 3687.993 kb on + strand at 3687.994 kb on - strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.995 kb on + strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3687.996 kb on - strand at 3688.065 kb on + strand at 3688.145 kb on - strand at 3688.145 kb on - strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.179 kb on + strand at 3688.183 kb on + strand at 3688.183 kb on + strand at 3688.206 kb on + strand at 3688.893 kb on + strand at 3688.893 kb on + strand at 3688.897 kb on + strand at 3688.908 kb on + strand at 3689.040 kb on + strand, within ECD_03506 at 3689.040 kb on + strand, within ECD_03506 at 3689.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,687,932 + +0.9 3,687,932 + -0.2 3,687,932 + +0.4 3,687,932 + -0.4 3,687,933 - -0.1 3,687,933 - -0.4 3,687,933 - -0.0 3,687,936 + -0.1 3,687,936 + -0.0 3,687,936 + -0.1 3,687,937 - +0.1 3,687,937 - +0.1 3,687,939 + -0.2 3,687,939 + +0.1 3,687,939 + -0.1 3,687,939 + -0.1 3,687,940 - +0.3 3,687,940 - +0.6 3,687,954 + -0.4 3,687,954 + -1.0 3,687,955 - +0.1 3,687,955 - +0.9 3,687,955 - -0.1 3,687,977 + +0.3 3,687,977 + +0.3 3,687,977 + +0.2 3,687,993 + -0.1 3,687,994 - +0.1 3,687,995 + +0.1 3,687,995 + +0.1 3,687,995 + -0.1 3,687,995 + -0.3 3,687,995 + +0.3 3,687,995 + +0.2 3,687,996 - +0.3 3,687,996 - -0.0 3,687,996 - +0.8 3,687,996 - +0.1 3,687,996 - +0.0 3,687,996 - +0.2 3,687,996 - +0.1 3,688,065 + +0.1 3,688,145 - +0.1 3,688,145 - -0.1 3,688,179 + -0.4 3,688,179 + -0.2 3,688,179 + +0.1 3,688,179 + -0.2 3,688,179 + +0.1 3,688,179 + +0.0 3,688,179 + +0.3 3,688,179 + -0.0 3,688,183 + -0.2 3,688,183 + +0.2 3,688,206 + +0.2 3,688,893 + -1.6 3,688,893 + -1.8 3,688,897 + -1.5 3,688,908 + -0.9 3,689,040 + ECD_03506 0.51 -1.2 3,689,040 + ECD_03506 0.51 -1.4 3,689,152 + -0.4
Or see this region's nucleotide sequence