Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03256 and ECD_03257 overlap by 4 nucleotides ECD_03257 and ECD_03258 are separated by 227 nucleotides ECD_03258 and ECD_03259 are separated by 96 nucleotides
ECD_03256: ECD_03256 - sensory histidine kinase in two-component regulatory system with OmpR, at 3,394,896 to 3,396,248
_03256
ECD_03257: ECD_03257 - response regulator in two-component regulatory system with EnvZ, at 3,396,245 to 3,396,964
_03257
ECD_03258: ECD_03258 - transcript cleavage factor, at 3,397,192 to 3,397,668
_03258
ECD_03259: ECD_03259 - putative transcriptional accessory protein, at 3,397,765 to 3,400,086
_03259
Position (kb)
3396
3397 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3395.389 kb on + strand, within ECD_03256 at 3395.429 kb on + strand, within ECD_03256 at 3395.430 kb on - strand, within ECD_03256 at 3395.510 kb on + strand, within ECD_03256 at 3395.511 kb on - strand, within ECD_03256 at 3395.567 kb on + strand, within ECD_03256 at 3395.627 kb on - strand, within ECD_03256 at 3395.648 kb on + strand, within ECD_03256 at 3395.649 kb on - strand, within ECD_03256 at 3395.714 kb on + strand, within ECD_03256 at 3395.747 kb on + strand, within ECD_03256 at 3395.748 kb on - strand, within ECD_03256 at 3395.759 kb on + strand, within ECD_03256 at 3395.759 kb on + strand, within ECD_03256 at 3395.760 kb on - strand, within ECD_03256 at 3395.760 kb on - strand, within ECD_03256 at 3395.760 kb on - strand, within ECD_03256 at 3395.926 kb on - strand, within ECD_03256 at 3395.935 kb on + strand, within ECD_03256 at 3395.936 kb on - strand, within ECD_03256 at 3396.094 kb on + strand, within ECD_03256 at 3396.107 kb on + strand, within ECD_03256 at 3396.157 kb on + strand at 3396.158 kb on - strand at 3396.277 kb on - strand at 3396.661 kb on - strand, within ECD_03257 at 3396.724 kb on + strand, within ECD_03257 at 3396.797 kb on + strand, within ECD_03257 at 3396.811 kb on + strand, within ECD_03257 at 3396.811 kb on + strand, within ECD_03257 at 3396.812 kb on - strand, within ECD_03257 at 3396.812 kb on - strand, within ECD_03257 at 3396.897 kb on + strand at 3396.952 kb on - strand at 3396.952 kb on - strand at 3396.998 kb on - strand at 3397.005 kb on + strand at 3397.038 kb on - strand at 3397.061 kb on - strand at 3397.080 kb on + strand at 3397.093 kb on - strand at 3397.135 kb on + strand at 3397.147 kb on - strand at 3397.148 kb on + strand at 3397.148 kb on + strand at 3397.245 kb on + strand, within ECD_03258 at 3397.245 kb on + strand, within ECD_03258 at 3397.249 kb on + strand, within ECD_03258 at 3397.249 kb on + strand, within ECD_03258 at 3397.333 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.340 kb on - strand, within ECD_03258 at 3397.340 kb on - strand, within ECD_03258 at 3397.390 kb on - strand, within ECD_03258 at 3397.420 kb on + strand, within ECD_03258 at 3397.503 kb on + strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.612 kb on - strand, within ECD_03258 at 3397.636 kb on + strand at 3397.636 kb on + strand at 3397.637 kb on - strand at 3397.637 kb on - strand at 3397.637 kb on - strand at 3397.641 kb on + strand at 3397.642 kb on - strand at 3397.680 kb on - strand at 3397.722 kb on + strand at 3397.722 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.860 kb on + strand at 3397.861 kb on - strand at 3397.861 kb on - strand at 3397.882 kb on + strand at 3397.926 kb on + strand at 3397.926 kb on + strand at 3397.927 kb on - strand at 3397.948 kb on + strand at 3397.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,395,389 + ECD_03256 0.36 -0.9 3,395,429 + ECD_03256 0.39 -1.6 3,395,430 - ECD_03256 0.39 -2.0 3,395,510 + ECD_03256 0.45 -1.8 3,395,511 - ECD_03256 0.45 -1.7 3,395,567 + ECD_03256 0.50 -1.5 3,395,627 - ECD_03256 0.54 -1.4 3,395,648 + ECD_03256 0.56 -1.2 3,395,649 - ECD_03256 0.56 -1.0 3,395,714 + ECD_03256 0.60 -2.8 3,395,747 + ECD_03256 0.63 -0.6 3,395,748 - ECD_03256 0.63 -0.3 3,395,759 + ECD_03256 0.64 -0.5 3,395,759 + ECD_03256 0.64 -2.4 3,395,760 - ECD_03256 0.64 -1.2 3,395,760 - ECD_03256 0.64 -0.8 3,395,760 - ECD_03256 0.64 -2.3 3,395,926 - ECD_03256 0.76 -1.5 3,395,935 + ECD_03256 0.77 -3.2 3,395,936 - ECD_03256 0.77 -1.5 3,396,094 + ECD_03256 0.89 -2.9 3,396,107 + ECD_03256 0.90 -1.8 3,396,157 + -1.6 3,396,158 - -1.8 3,396,277 - -0.5 3,396,661 - ECD_03257 0.58 -1.9 3,396,724 + ECD_03257 0.67 -2.0 3,396,797 + ECD_03257 0.77 -3.4 3,396,811 + ECD_03257 0.79 -3.3 3,396,811 + ECD_03257 0.79 -3.2 3,396,812 - ECD_03257 0.79 -2.9 3,396,812 - ECD_03257 0.79 -2.8 3,396,897 + -3.1 3,396,952 - -2.4 3,396,952 - -2.5 3,396,998 - -0.0 3,397,005 + -0.9 3,397,038 - +0.4 3,397,061 - +0.1 3,397,080 + -0.2 3,397,093 - -0.0 3,397,135 + +0.4 3,397,147 - -0.2 3,397,148 + +0.2 3,397,148 + +0.4 3,397,245 + ECD_03258 0.11 -0.7 3,397,245 + ECD_03258 0.11 +0.8 3,397,249 + ECD_03258 0.12 +0.1 3,397,249 + ECD_03258 0.12 +1.3 3,397,333 + ECD_03258 0.30 +0.5 3,397,339 + ECD_03258 0.31 -0.1 3,397,339 + ECD_03258 0.31 +0.1 3,397,339 + ECD_03258 0.31 -0.2 3,397,339 + ECD_03258 0.31 -0.3 3,397,340 - ECD_03258 0.31 +0.1 3,397,340 - ECD_03258 0.31 +0.4 3,397,390 - ECD_03258 0.42 -0.4 3,397,420 + ECD_03258 0.48 -0.3 3,397,503 + ECD_03258 0.65 -0.6 3,397,541 - ECD_03258 0.73 +0.9 3,397,541 - ECD_03258 0.73 +0.2 3,397,541 - ECD_03258 0.73 +0.5 3,397,612 - ECD_03258 0.88 -0.1 3,397,636 + -0.6 3,397,636 + -0.2 3,397,637 - -0.8 3,397,637 - +0.6 3,397,637 - +0.1 3,397,641 + -0.0 3,397,642 - +0.1 3,397,680 - +0.3 3,397,722 + +0.3 3,397,722 + +0.3 3,397,726 + -0.1 3,397,726 + -0.1 3,397,726 + +0.4 3,397,726 + -0.0 3,397,726 + +0.0 3,397,860 + +1.2 3,397,861 - +0.4 3,397,861 - -0.3 3,397,882 + -0.2 3,397,926 + +0.2 3,397,926 + -0.1 3,397,927 - +0.6 3,397,948 + -0.3 3,397,948 + +0.0
Or see this region's nucleotide sequence