Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00010 and ECD_03130 are separated by 473 nucleotides ECD_03130 and ECD_03131 overlap by 25 nucleotides ECD_03131 and ECD_03132 overlap by 4 nucleotides
ECD_r00010: ECD_r00010 - 16S ribosomal RNA, at 3,288,391 to 3,289,932
_r00010
ECD_03130: ECD_03130 - bacterial transferase hexapeptide domain protein, at 3,290,406 to 3,290,960
_03130
ECD_03131: ECD_03131 - DUF1488 family protein, at 3,290,936 to 3,291,193
_03131
ECD_03132: ECD_03132 - dehydroshikimate reductase, NAD(P)-binding, at 3,291,190 to 3,292,008
_03132
Position (kb)
3290
3291 Strain fitness (log2 ratio)
-2
-1
0
1 at 3290.231 kb on - strand at 3290.231 kb on - strand at 3290.338 kb on + strand at 3290.339 kb on - strand at 3290.390 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.406 kb on - strand at 3290.419 kb on + strand at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.598 kb on - strand, within ECD_03130 at 3290.616 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.756 kb on - strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.786 kb on + strand, within ECD_03130 at 3290.829 kb on + strand, within ECD_03130 at 3290.830 kb on - strand, within ECD_03130 at 3290.892 kb on + strand, within ECD_03130 at 3290.907 kb on + strand at 3290.908 kb on - strand at 3291.052 kb on + strand, within ECD_03131 at 3291.110 kb on - strand, within ECD_03131 at 3291.110 kb on - strand, within ECD_03131 at 3291.135 kb on - strand, within ECD_03131 at 3291.220 kb on + strand at 3291.221 kb on - strand at 3291.222 kb on + strand at 3291.232 kb on + strand at 3291.296 kb on - strand, within ECD_03132 at 3291.309 kb on + strand, within ECD_03132 at 3291.565 kb on - strand, within ECD_03132 at 3291.569 kb on - strand, within ECD_03132
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,290,231 - +0.6 3,290,231 - -0.2 3,290,338 + +0.1 3,290,339 - +0.2 3,290,390 + +0.1 3,290,405 + -0.4 3,290,405 + -0.3 3,290,405 + +0.8 3,290,405 + -0.2 3,290,406 - +0.4 3,290,419 + +0.1 3,290,551 + ECD_03130 0.26 -0.1 3,290,551 + ECD_03130 0.26 -0.0 3,290,551 + ECD_03130 0.26 +0.3 3,290,551 + ECD_03130 0.26 +0.9 3,290,552 - ECD_03130 0.26 +0.7 3,290,552 - ECD_03130 0.26 +0.2 3,290,552 - ECD_03130 0.26 -0.4 3,290,552 - ECD_03130 0.26 +0.5 3,290,552 - ECD_03130 0.26 -0.2 3,290,556 + ECD_03130 0.27 +0.0 3,290,556 + ECD_03130 0.27 -1.3 3,290,556 + ECD_03130 0.27 +0.1 3,290,556 + ECD_03130 0.27 -0.5 3,290,556 + ECD_03130 0.27 +0.4 3,290,556 + ECD_03130 0.27 -0.3 3,290,557 - ECD_03130 0.27 +0.1 3,290,557 - ECD_03130 0.27 +0.5 3,290,557 - ECD_03130 0.27 +0.4 3,290,557 - ECD_03130 0.27 +0.1 3,290,560 + ECD_03130 0.28 -0.2 3,290,560 + ECD_03130 0.28 +0.3 3,290,597 + ECD_03130 0.34 +0.2 3,290,597 + ECD_03130 0.34 -0.3 3,290,598 - ECD_03130 0.35 +0.1 3,290,616 - ECD_03130 0.38 +0.5 3,290,626 - ECD_03130 0.40 +0.5 3,290,626 - ECD_03130 0.40 +0.2 3,290,756 - ECD_03130 0.63 -0.2 3,290,758 + ECD_03130 0.63 +0.3 3,290,758 + ECD_03130 0.63 +0.3 3,290,759 - ECD_03130 0.64 -0.2 3,290,759 - ECD_03130 0.64 +1.0 3,290,786 + ECD_03130 0.68 -0.3 3,290,829 + ECD_03130 0.76 -0.1 3,290,830 - ECD_03130 0.76 +0.4 3,290,892 + ECD_03130 0.88 +0.7 3,290,907 + +0.2 3,290,908 - +0.1 3,291,052 + ECD_03131 0.45 +0.3 3,291,110 - ECD_03131 0.67 +0.0 3,291,110 - ECD_03131 0.67 -0.2 3,291,135 - ECD_03131 0.77 +0.4 3,291,220 + -0.4 3,291,221 - +0.3 3,291,222 + -0.7 3,291,232 + -1.9 3,291,296 - ECD_03132 0.13 -0.8 3,291,309 + ECD_03132 0.15 -1.8 3,291,565 - ECD_03132 0.46 -1.2 3,291,569 - ECD_03132 0.46 -0.8
Or see this region's nucleotide sequence