Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03118 and ECD_03119 are separated by 25 nucleotides ECD_03119 and ECD_03120 are separated by 85 nucleotides
ECD_03118: ECD_03118 - tRNA-dihydrouridine synthase B, at 3,271,436 to 3,272,401
_03118
ECD_03119: ECD_03119 - global DNA-binding transcriptional dual regulator, at 3,272,427 to 3,272,723
_03119
ECD_03120: ECD_03120 - DNA adenine methyltransferase, SAM-dependent, at 3,272,809 to 3,273,693
_03120
Position (kb)
3272
3273 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3271.430 kb on + strand at 3271.430 kb on + strand at 3271.451 kb on + strand at 3271.451 kb on + strand at 3271.452 kb on - strand at 3271.567 kb on + strand, within ECD_03118 at 3271.687 kb on + strand, within ECD_03118 at 3271.688 kb on - strand, within ECD_03118 at 3271.882 kb on + strand, within ECD_03118 at 3271.982 kb on + strand, within ECD_03118 at 3271.990 kb on + strand, within ECD_03118 at 3271.990 kb on + strand, within ECD_03118 at 3272.078 kb on + strand, within ECD_03118 at 3272.080 kb on + strand, within ECD_03118 at 3272.080 kb on + strand, within ECD_03118 at 3272.080 kb on + strand, within ECD_03118 at 3272.103 kb on + strand, within ECD_03118 at 3272.153 kb on + strand, within ECD_03118 at 3272.153 kb on + strand, within ECD_03118 at 3272.243 kb on + strand, within ECD_03118 at 3272.243 kb on + strand, within ECD_03118 at 3272.275 kb on + strand, within ECD_03118 at 3272.275 kb on + strand, within ECD_03118 at 3272.275 kb on + strand, within ECD_03118 at 3272.409 kb on + strand at 3272.409 kb on + strand at 3272.409 kb on + strand at 3272.426 kb on + strand at 3272.426 kb on + strand at 3272.427 kb on - strand at 3272.455 kb on + strand at 3272.577 kb on + strand, within ECD_03119 at 3272.631 kb on + strand, within ECD_03119 at 3272.631 kb on + strand, within ECD_03119 at 3272.684 kb on + strand, within ECD_03119 at 3272.895 kb on - strand at 3272.895 kb on - strand at 3272.899 kb on - strand, within ECD_03120 at 3272.936 kb on - strand, within ECD_03120 at 3273.055 kb on + strand, within ECD_03120 at 3273.055 kb on + strand, within ECD_03120 at 3273.061 kb on - strand, within ECD_03120 at 3273.115 kb on - strand, within ECD_03120 at 3273.143 kb on - strand, within ECD_03120 at 3273.187 kb on + strand, within ECD_03120 at 3273.187 kb on + strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.188 kb on - strand, within ECD_03120 at 3273.226 kb on + strand, within ECD_03120 at 3273.227 kb on - strand, within ECD_03120 at 3273.316 kb on + strand, within ECD_03120 at 3273.317 kb on - strand, within ECD_03120 at 3273.317 kb on - strand, within ECD_03120 at 3273.367 kb on + strand, within ECD_03120 at 3273.371 kb on + strand, within ECD_03120 at 3273.593 kb on - strand, within ECD_03120
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,271,430 + +0.5 3,271,430 + +0.2 3,271,451 + -0.3 3,271,451 + +0.1 3,271,452 - -0.2 3,271,567 + ECD_03118 0.14 +1.0 3,271,687 + ECD_03118 0.26 -0.1 3,271,688 - ECD_03118 0.26 -0.0 3,271,882 + ECD_03118 0.46 +0.3 3,271,982 + ECD_03118 0.57 -0.6 3,271,990 + ECD_03118 0.57 +0.5 3,271,990 + ECD_03118 0.57 +0.2 3,272,078 + ECD_03118 0.66 +0.0 3,272,080 + ECD_03118 0.67 -0.1 3,272,080 + ECD_03118 0.67 +0.3 3,272,080 + ECD_03118 0.67 +0.1 3,272,103 + ECD_03118 0.69 +0.2 3,272,153 + ECD_03118 0.74 +0.5 3,272,153 + ECD_03118 0.74 +0.1 3,272,243 + ECD_03118 0.84 -0.1 3,272,243 + ECD_03118 0.84 +0.2 3,272,275 + ECD_03118 0.87 +0.3 3,272,275 + ECD_03118 0.87 -0.8 3,272,275 + ECD_03118 0.87 -0.0 3,272,409 + +0.5 3,272,409 + -0.7 3,272,409 + +0.4 3,272,426 + +0.6 3,272,426 + -0.5 3,272,427 - -1.8 3,272,455 + -1.2 3,272,577 + ECD_03119 0.51 -1.8 3,272,631 + ECD_03119 0.69 -0.6 3,272,631 + ECD_03119 0.69 +0.2 3,272,684 + ECD_03119 0.87 -2.3 3,272,895 - -0.6 3,272,895 - +0.7 3,272,899 - ECD_03120 0.10 +0.1 3,272,936 - ECD_03120 0.14 -0.2 3,273,055 + ECD_03120 0.28 +1.8 3,273,055 + ECD_03120 0.28 -0.2 3,273,061 - ECD_03120 0.28 +0.1 3,273,115 - ECD_03120 0.35 +0.2 3,273,143 - ECD_03120 0.38 -0.1 3,273,187 + ECD_03120 0.43 -0.8 3,273,187 + ECD_03120 0.43 -0.2 3,273,188 - ECD_03120 0.43 +0.5 3,273,188 - ECD_03120 0.43 +0.5 3,273,188 - ECD_03120 0.43 -0.1 3,273,226 + ECD_03120 0.47 +1.1 3,273,227 - ECD_03120 0.47 +0.2 3,273,316 + ECD_03120 0.57 -0.2 3,273,317 - ECD_03120 0.57 -0.6 3,273,317 - ECD_03120 0.57 -0.4 3,273,367 + ECD_03120 0.63 +0.1 3,273,371 + ECD_03120 0.64 +0.2 3,273,593 - ECD_03120 0.89 +0.1
Or see this region's nucleotide sequence