Strain Fitness in Escherichia coli BL21 around ECD_03092

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03090 and ECD_03091 are separated by 15 nucleotidesECD_03091 and ECD_03092 are separated by 218 nucleotidesECD_03092 and ECD_03093 are separated by 193 nucleotidesECD_03093 and ECD_03094 are separated by 153 nucleotides ECD_03090: ECD_03090 - 30S ribosomal subunit protein S9, at 3,238,978 to 3,239,370 _03090 ECD_03091: ECD_03091 - 50S ribosomal subunit protein L13, at 3,239,386 to 3,239,814 _03091 ECD_03092: ECD_03092 - divisome ATPase, at 3,240,033 to 3,241,160 _03092 ECD_03093: ECD_03093 - DUF1043 family inner membrane-anchored protein, at 3,241,354 to 3,241,752 _03093 ECD_03094: ECD_03094 - serine endoprotease, periplasmic, at 3,241,906 to 3,243,273 _03094 Position (kb) 3240 3241 3242Strain fitness (log2 ratio) -1 0 1 2at 3239.916 kb on - strandat 3240.042 kb on + strandat 3240.043 kb on - strandat 3240.043 kb on - strandat 3240.062 kb on - strandat 3240.142 kb on + strandat 3240.168 kb on + strand, within ECD_03092at 3240.187 kb on + strand, within ECD_03092at 3240.188 kb on - strand, within ECD_03092at 3240.246 kb on - strand, within ECD_03092at 3240.252 kb on + strand, within ECD_03092at 3240.253 kb on - strand, within ECD_03092at 3240.272 kb on + strand, within ECD_03092at 3240.296 kb on + strand, within ECD_03092at 3240.296 kb on + strand, within ECD_03092at 3240.297 kb on - strand, within ECD_03092at 3240.297 kb on - strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.298 kb on + strand, within ECD_03092at 3240.299 kb on - strand, within ECD_03092at 3240.299 kb on - strand, within ECD_03092at 3240.299 kb on - strand, within ECD_03092at 3240.299 kb on - strand, within ECD_03092at 3240.332 kb on + strand, within ECD_03092at 3240.333 kb on - strand, within ECD_03092at 3240.336 kb on - strand, within ECD_03092at 3240.444 kb on + strand, within ECD_03092at 3240.449 kb on + strand, within ECD_03092at 3240.449 kb on + strand, within ECD_03092at 3240.450 kb on - strand, within ECD_03092at 3240.512 kb on + strand, within ECD_03092at 3240.512 kb on + strand, within ECD_03092at 3240.512 kb on + strand, within ECD_03092at 3240.549 kb on + strand, within ECD_03092at 3240.549 kb on + strand, within ECD_03092at 3240.550 kb on - strand, within ECD_03092at 3240.550 kb on - strand, within ECD_03092at 3240.567 kb on - strand, within ECD_03092at 3240.567 kb on - strand, within ECD_03092at 3240.636 kb on - strand, within ECD_03092at 3240.697 kb on - strand, within ECD_03092at 3240.697 kb on - strand, within ECD_03092at 3240.713 kb on + strand, within ECD_03092at 3240.814 kb on - strand, within ECD_03092at 3240.814 kb on - strand, within ECD_03092at 3240.836 kb on + strand, within ECD_03092at 3240.886 kb on + strand, within ECD_03092at 3240.887 kb on - strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.935 kb on + strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.936 kb on - strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.937 kb on + strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.938 kb on - strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.939 kb on + strand, within ECD_03092at 3240.940 kb on - strand, within ECD_03092at 3241.038 kb on - strand, within ECD_03092at 3241.038 kb on - strand, within ECD_03092at 3241.059 kb on - strandat 3241.059 kb on - strandat 3241.241 kb on - strandat 3241.279 kb on + strandat 3241.279 kb on + strandat 3241.279 kb on + strandat 3241.279 kb on + strandat 3241.280 kb on - strandat 3241.280 kb on - strandat 3241.287 kb on + strandat 3241.288 kb on - strandat 3241.288 kb on - strandat 3241.366 kb on + strandat 3241.373 kb on + strandat 3241.476 kb on + strand, within ECD_03093at 3241.573 kb on + strand, within ECD_03093at 3241.750 kb on + strandat 3241.805 kb on - strandat 3241.811 kb on + strandat 3241.812 kb on - strandat 3241.812 kb on - strandat 3241.890 kb on + strandat 3241.937 kb on + strandat 3241.943 kb on + strandat 3241.943 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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3,239,916 - -0.1
3,240,042 + -0.8
3,240,043 - +0.2
3,240,043 - +0.0
3,240,062 - +0.2
3,240,142 + +0.6
3,240,168 + ECD_03092 0.12 -0.2
3,240,187 + ECD_03092 0.14 -0.5
3,240,188 - ECD_03092 0.14 -0.2
3,240,246 - ECD_03092 0.19 -0.2
3,240,252 + ECD_03092 0.19 +0.3
3,240,253 - ECD_03092 0.20 -0.4
3,240,272 + ECD_03092 0.21 -0.6
3,240,296 + ECD_03092 0.23 +0.3
3,240,296 + ECD_03092 0.23 -0.3
3,240,297 - ECD_03092 0.23 +0.5
3,240,297 - ECD_03092 0.23 +1.5
3,240,298 + ECD_03092 0.23 -0.4
3,240,298 + ECD_03092 0.23 -0.3
3,240,298 + ECD_03092 0.23 -0.3
3,240,298 + ECD_03092 0.23 +0.1
3,240,298 + ECD_03092 0.23 +0.4
3,240,298 + ECD_03092 0.23 +0.3
3,240,298 + ECD_03092 0.23 -0.3
3,240,299 - ECD_03092 0.24 +0.3
3,240,299 - ECD_03092 0.24 +0.3
3,240,299 - ECD_03092 0.24 -0.4
3,240,299 - ECD_03092 0.24 -0.7
3,240,332 + ECD_03092 0.27 -0.5
3,240,333 - ECD_03092 0.27 -0.5
3,240,336 - ECD_03092 0.27 -0.4
3,240,444 + ECD_03092 0.36 +0.1
3,240,449 + ECD_03092 0.37 -0.6
3,240,449 + ECD_03092 0.37 -0.6
3,240,450 - ECD_03092 0.37 -0.0
3,240,512 + ECD_03092 0.42 -0.7
3,240,512 + ECD_03092 0.42 -0.2
3,240,512 + ECD_03092 0.42 -0.1
3,240,549 + ECD_03092 0.46 -0.7
3,240,549 + ECD_03092 0.46 +0.1
3,240,550 - ECD_03092 0.46 -0.6
3,240,550 - ECD_03092 0.46 +0.2
3,240,567 - ECD_03092 0.47 -0.6
3,240,567 - ECD_03092 0.47 -1.3
3,240,636 - ECD_03092 0.53 -0.2
3,240,697 - ECD_03092 0.59 -0.9
3,240,697 - ECD_03092 0.59 +1.8
3,240,713 + ECD_03092 0.60 +0.1
3,240,814 - ECD_03092 0.69 -0.1
3,240,814 - ECD_03092 0.69 -1.2
3,240,836 + ECD_03092 0.71 -0.2
3,240,886 + ECD_03092 0.76 -0.3
3,240,887 - ECD_03092 0.76 -0.3
3,240,935 + ECD_03092 0.80 -0.3
3,240,935 + ECD_03092 0.80 -0.4
3,240,935 + ECD_03092 0.80 +0.1
3,240,935 + ECD_03092 0.80 -1.0
3,240,935 + ECD_03092 0.80 -0.6
3,240,935 + ECD_03092 0.80 -0.4
3,240,935 + ECD_03092 0.80 +0.4
3,240,935 + ECD_03092 0.80 -0.1
3,240,935 + ECD_03092 0.80 +0.1
3,240,936 - ECD_03092 0.80 +0.1
3,240,936 - ECD_03092 0.80 -0.1
3,240,936 - ECD_03092 0.80 +0.3
3,240,936 - ECD_03092 0.80 +0.4
3,240,936 - ECD_03092 0.80 +0.3
3,240,936 - ECD_03092 0.80 +0.5
3,240,937 + ECD_03092 0.80 -0.4
3,240,937 + ECD_03092 0.80 -0.5
3,240,937 + ECD_03092 0.80 -0.3
3,240,937 + ECD_03092 0.80 +0.3
3,240,937 + ECD_03092 0.80 -1.2
3,240,937 + ECD_03092 0.80 -0.7
3,240,937 + ECD_03092 0.80 +0.3
3,240,937 + ECD_03092 0.80 +0.0
3,240,937 + ECD_03092 0.80 +0.9
3,240,937 + ECD_03092 0.80 -0.5
3,240,937 + ECD_03092 0.80 -0.5
3,240,938 - ECD_03092 0.80 -0.5
3,240,938 - ECD_03092 0.80 -0.5
3,240,938 - ECD_03092 0.80 -0.9
3,240,938 - ECD_03092 0.80 -0.1
3,240,938 - ECD_03092 0.80 +0.6
3,240,938 - ECD_03092 0.80 -0.4
3,240,938 - ECD_03092 0.80 +0.0
3,240,938 - ECD_03092 0.80 -0.4
3,240,938 - ECD_03092 0.80 +0.5
3,240,939 + ECD_03092 0.80 -0.6
3,240,939 + ECD_03092 0.80 +0.4
3,240,939 + ECD_03092 0.80 -0.1
3,240,939 + ECD_03092 0.80 -0.2
3,240,939 + ECD_03092 0.80 +0.3
3,240,939 + ECD_03092 0.80 -1.2
3,240,940 - ECD_03092 0.80 -0.4
3,241,038 - ECD_03092 0.89 +0.1
3,241,038 - ECD_03092 0.89 -0.1
3,241,059 - +0.1
3,241,059 - +0.6
3,241,241 - +0.2
3,241,279 + +0.0
3,241,279 + -0.6
3,241,279 + +0.0
3,241,279 + -0.5
3,241,280 - -1.4
3,241,280 - -1.0
3,241,287 + +0.1
3,241,288 - +0.6
3,241,288 - +0.1
3,241,366 + -0.3
3,241,373 + -0.5
3,241,476 + ECD_03093 0.31 -1.4
3,241,573 + ECD_03093 0.55 -0.6
3,241,750 + -0.3
3,241,805 - -0.2
3,241,811 + +0.3
3,241,812 - +0.2
3,241,812 - +0.3
3,241,890 + +0.6
3,241,937 + -0.4
3,241,943 + -0.1
3,241,943 + +0.1

Or see this region's nucleotide sequence