Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03065 and ECD_03066 are separated by 6 nucleotides ECD_03066 and ECD_03067 are separated by 47 nucleotides ECD_03067 and ECD_03068 are separated by 22 nucleotides ECD_03068 and ECD_03069 are separated by 117 nucleotides ECD_03069 and ECD_03070 are separated by 45 nucleotides
ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437
_03065
ECD_03066: ECD_03066 - lipopolysaccharide export ABC transporter ATPase, at 3,212,444 to 3,213,169
_03066
ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650
_03067
ECD_03068: ECD_03068 - ribosome hibernation promoting factor HPF; stabilizes 100S dimers, at 3,214,673 to 3,214,960
_03068
ECD_03069: ECD_03069 - sugar-specific enzyme IIA component of PTS, at 3,215,078 to 3,215,569
_03069
ECD_03070: ECD_03070 - adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase, at 3,215,615 to 3,216,469
_03070
Position (kb)
3213
3214
3215 Strain fitness (log2 ratio)
-2
-1
0
1 at 3213.193 kb on + strand at 3214.123 kb on + strand, within ECD_03067 at 3214.123 kb on + strand, within ECD_03067 at 3214.496 kb on + strand, within ECD_03067 at 3214.635 kb on + strand at 3214.672 kb on + strand at 3214.784 kb on + strand, within ECD_03068 at 3214.784 kb on + strand, within ECD_03068 at 3214.839 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.909 kb on + strand, within ECD_03068 at 3214.936 kb on + strand at 3214.936 kb on + strand at 3214.936 kb on + strand at 3214.958 kb on + strand at 3214.958 kb on + strand at 3214.958 kb on + strand at 3214.974 kb on + strand at 3215.019 kb on + strand at 3215.428 kb on + strand, within ECD_03069 at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.590 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,213,193 + -1.0 3,214,123 + ECD_03067 0.63 -2.7 3,214,123 + ECD_03067 0.63 -1.6 3,214,496 + ECD_03067 0.89 -1.6 3,214,635 + -0.2 3,214,672 + -0.6 3,214,784 + ECD_03068 0.39 -0.4 3,214,784 + ECD_03068 0.39 -0.0 3,214,839 + ECD_03068 0.58 +0.3 3,214,883 + ECD_03068 0.73 -0.1 3,214,883 + ECD_03068 0.73 -0.8 3,214,883 + ECD_03068 0.73 -1.1 3,214,883 + ECD_03068 0.73 +0.0 3,214,883 + ECD_03068 0.73 +0.7 3,214,883 + ECD_03068 0.73 +0.3 3,214,883 + ECD_03068 0.73 +0.9 3,214,909 + ECD_03068 0.82 -0.2 3,214,936 + +0.1 3,214,936 + -0.0 3,214,936 + -0.0 3,214,958 + -0.0 3,214,958 + +0.3 3,214,958 + +0.3 3,214,974 + -0.6 3,215,019 + +0.1 3,215,428 + ECD_03069 0.71 -0.7 3,215,567 + -0.1 3,215,567 + +0.1 3,215,567 + -0.0 3,215,567 + +0.2 3,215,590 + -0.1 3,215,612 + -0.8 3,215,612 + -1.9 3,215,612 + -0.5 3,215,612 + +0.2 3,215,612 + -0.7 3,215,613 - -0.4
Or see this region's nucleotide sequence