Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03064 and ECD_03065 overlap by 32 nucleotides ECD_03065 and ECD_03066 are separated by 6 nucleotides ECD_03066 and ECD_03067 are separated by 47 nucleotides
ECD_03064: ECD_03064 - periplasmic membrane-anchored LPS-binding protein; LPS export protein, at 3,211,336 to 3,211,911
_03064
ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437
_03065
ECD_03066: ECD_03066 - lipopolysaccharide export ABC transporter ATPase, at 3,212,444 to 3,213,169
_03066
ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650
_03067
Position (kb) 3212
3213
3214 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3211.764 kb on + strand, within ECD_03064 at 3211.764 kb on + strand, within ECD_03064 at 3211.787 kb on + strand, within ECD_03064 at 3211.789 kb on + strand, within ECD_03064 at 3213.193 kb on + strand at 3214.123 kb on + strand, within ECD_03067 at 3214.123 kb on + strand, within ECD_03067
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,211,764 + ECD_03064 0.74 -0.8 3,211,764 + ECD_03064 0.74 +0.6 3,211,787 + ECD_03064 0.78 -0.1 3,211,789 + ECD_03064 0.79 -2.9 3,213,193 + -1.0 3,214,123 + ECD_03067 0.63 -2.7 3,214,123 + ECD_03067 0.63 -1.6
Or see this region's nucleotide sequence