Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02993 and ECD_02994 are separated by 147 nucleotides ECD_02994 and ECD_02995 are separated by 143 nucleotides ECD_02995 and ECD_02996 are separated by 54 nucleotides
ECD_02993: ECD_02993 - D-galactarate dehydrogenase, at 3,141,476 to 3,143,047
_02993
ECD_02994: ECD_02994 - antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system, at 3,143,195 to 3,143,530
_02994
ECD_02995: ECD_02995 - toxin of the SohB(PrlF)-YhaV toxin-antitoxin system, at 3,143,674 to 3,143,994
_02995
ECD_02996: ECD_02996 - transcriptional repressor of the aga regulon, at 3,144,049 to 3,144,858
_02996
Position (kb)
3143
3144 Strain fitness (log2 ratio)
-1
0
1 at 3142.273 kb on - strand, within ECD_02993 at 3142.389 kb on - strand, within ECD_02993 at 3142.530 kb on - strand, within ECD_02993 at 3142.534 kb on + strand, within ECD_02993 at 3142.538 kb on + strand, within ECD_02993 at 3142.539 kb on - strand, within ECD_02993 at 3142.539 kb on - strand, within ECD_02993 at 3142.611 kb on + strand, within ECD_02993 at 3142.639 kb on + strand, within ECD_02993 at 3142.710 kb on - strand, within ECD_02993 at 3142.876 kb on - strand, within ECD_02993 at 3142.951 kb on + strand at 3143.124 kb on + strand at 3143.124 kb on + strand at 3143.125 kb on - strand at 3143.223 kb on + strand at 3143.267 kb on - strand, within ECD_02994 at 3143.292 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.349 kb on + strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.350 kb on - strand, within ECD_02994 at 3143.353 kb on + strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.354 kb on - strand, within ECD_02994 at 3143.386 kb on + strand, within ECD_02994 at 3143.386 kb on + strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.387 kb on - strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.389 kb on + strand, within ECD_02994 at 3143.390 kb on - strand, within ECD_02994 at 3143.390 kb on - strand, within ECD_02994 at 3143.565 kb on - strand at 3143.566 kb on + strand at 3143.566 kb on + strand at 3143.566 kb on + strand at 3143.567 kb on - strand at 3143.567 kb on - strand at 3143.604 kb on - strand at 3143.706 kb on + strand, within ECD_02995 at 3143.707 kb on - strand, within ECD_02995 at 3143.826 kb on + strand, within ECD_02995 at 3143.888 kb on - strand, within ECD_02995 at 3143.916 kb on - strand, within ECD_02995 at 3144.163 kb on - strand, within ECD_02996 at 3144.163 kb on - strand, within ECD_02996 at 3144.187 kb on - strand, within ECD_02996 at 3144.203 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996 at 3144.299 kb on - strand, within ECD_02996
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 3,142,273 - ECD_02993 0.51 -0.1 3,142,389 - ECD_02993 0.58 +0.7 3,142,530 - ECD_02993 0.67 -0.5 3,142,534 + ECD_02993 0.67 -0.1 3,142,538 + ECD_02993 0.68 +0.1 3,142,539 - ECD_02993 0.68 +1.0 3,142,539 - ECD_02993 0.68 -0.4 3,142,611 + ECD_02993 0.72 +0.1 3,142,639 + ECD_02993 0.74 +0.6 3,142,710 - ECD_02993 0.78 +0.7 3,142,876 - ECD_02993 0.89 -0.1 3,142,951 + +0.0 3,143,124 + +0.6 3,143,124 + +0.3 3,143,125 - +0.2 3,143,223 + +0.4 3,143,267 - ECD_02994 0.21 -0.2 3,143,292 + ECD_02994 0.29 +0.2 3,143,349 + ECD_02994 0.46 -0.3 3,143,349 + ECD_02994 0.46 +0.1 3,143,349 + ECD_02994 0.46 -0.5 3,143,350 - ECD_02994 0.46 +0.1 3,143,350 - ECD_02994 0.46 -0.3 3,143,350 - ECD_02994 0.46 -0.1 3,143,350 - ECD_02994 0.46 +0.1 3,143,353 + ECD_02994 0.47 -0.3 3,143,354 - ECD_02994 0.47 -0.3 3,143,354 - ECD_02994 0.47 +0.8 3,143,354 - ECD_02994 0.47 +0.1 3,143,386 + ECD_02994 0.57 +0.0 3,143,386 + ECD_02994 0.57 -0.3 3,143,387 - ECD_02994 0.57 +0.1 3,143,387 - ECD_02994 0.57 +0.2 3,143,387 - ECD_02994 0.57 +0.3 3,143,389 + ECD_02994 0.58 +0.4 3,143,389 + ECD_02994 0.58 +0.1 3,143,389 + ECD_02994 0.58 +0.6 3,143,389 + ECD_02994 0.58 +0.2 3,143,389 + ECD_02994 0.58 +0.8 3,143,390 - ECD_02994 0.58 -0.3 3,143,390 - ECD_02994 0.58 -0.6 3,143,565 - -0.2 3,143,566 + +0.5 3,143,566 + +0.5 3,143,566 + -0.0 3,143,567 - -0.0 3,143,567 - +0.1 3,143,604 - +0.3 3,143,706 + ECD_02995 0.10 +0.2 3,143,707 - ECD_02995 0.10 +0.3 3,143,826 + ECD_02995 0.47 +0.5 3,143,888 - ECD_02995 0.67 +0.3 3,143,916 - ECD_02995 0.75 -0.7 3,144,163 - ECD_02996 0.14 +0.5 3,144,163 - ECD_02996 0.14 -0.7 3,144,187 - ECD_02996 0.17 +0.4 3,144,203 - ECD_02996 0.19 +0.6 3,144,299 - ECD_02996 0.31 -1.1 3,144,299 - ECD_02996 0.31 -0.7 3,144,299 - ECD_02996 0.31 -0.6 3,144,299 - ECD_02996 0.31 -0.2
Or see this region's nucleotide sequence