Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02763 and ECD_02764 are separated by 54 nucleotides ECD_02764 and ECD_02765 are separated by 313 nucleotides ECD_02765 and ECD_02766 are separated by 277 nucleotides
ECD_02763: ECD_02763 - putative mannitol-specific PTS IIB and IIC components, at 2,908,329 to 2,909,717
_02763
ECD_02764: ECD_02764 - putative mannitol-specific enzyme IIA component of PTS, at 2,909,772 to 2,910,188
_02764
ECD_02765: ECD_02765 - transketolase 1, thiamine triphosphate-binding, at 2,910,502 to 2,912,493
_02765
ECD_02766: ECD_02766 - Phe-Phe periplasmic metalloprotease, OM lipoprotein; low salt-inducible; Era-binding heat shock protein, at 2,912,771 to 2,913,529
_02766
Position (kb)
2910
2911
2912
2913 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2909.539 kb on - strand, within ECD_02763 at 2909.542 kb on + strand, within ECD_02763 at 2909.547 kb on - strand, within ECD_02763 at 2910.499 kb on + strand at 2910.630 kb on - strand at 2910.707 kb on + strand, within ECD_02765 at 2910.873 kb on - strand, within ECD_02765 at 2910.981 kb on - strand, within ECD_02765 at 2910.981 kb on - strand, within ECD_02765 at 2911.026 kb on + strand, within ECD_02765 at 2911.027 kb on - strand, within ECD_02765 at 2911.027 kb on - strand, within ECD_02765 at 2911.027 kb on - strand, within ECD_02765 at 2911.156 kb on - strand, within ECD_02765 at 2911.160 kb on - strand, within ECD_02765 at 2911.168 kb on - strand, within ECD_02765 at 2911.206 kb on - strand, within ECD_02765 at 2911.275 kb on - strand, within ECD_02765 at 2911.283 kb on + strand, within ECD_02765 at 2911.284 kb on - strand, within ECD_02765 at 2911.284 kb on - strand, within ECD_02765 at 2911.284 kb on - strand, within ECD_02765 at 2911.284 kb on - strand, within ECD_02765 at 2911.314 kb on + strand, within ECD_02765 at 2911.623 kb on - strand, within ECD_02765 at 2911.825 kb on - strand, within ECD_02765 at 2911.936 kb on - strand, within ECD_02765 at 2911.950 kb on - strand, within ECD_02765 at 2912.481 kb on + strand at 2912.482 kb on - strand at 2912.604 kb on + strand at 2912.604 kb on + strand at 2912.604 kb on + strand at 2912.604 kb on + strand at 2912.604 kb on + strand at 2912.604 kb on + strand at 2912.605 kb on - strand at 2912.666 kb on + strand at 2912.667 kb on - strand at 2912.693 kb on + strand at 2912.695 kb on + strand at 2912.743 kb on - strand at 2912.787 kb on + strand at 2912.787 kb on + strand at 2912.833 kb on + strand at 2912.975 kb on + strand, within ECD_02766 at 2912.995 kb on + strand, within ECD_02766 at 2912.995 kb on + strand, within ECD_02766 at 2912.995 kb on + strand, within ECD_02766 at 2912.995 kb on + strand, within ECD_02766 at 2912.996 kb on - strand, within ECD_02766 at 2913.009 kb on + strand, within ECD_02766 at 2913.020 kb on - strand, within ECD_02766 at 2913.020 kb on - strand, within ECD_02766 at 2913.042 kb on - strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.050 kb on + strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.051 kb on - strand, within ECD_02766 at 2913.121 kb on + strand, within ECD_02766 at 2913.122 kb on - strand, within ECD_02766 at 2913.217 kb on + strand, within ECD_02766 at 2913.217 kb on + strand, within ECD_02766 at 2913.218 kb on - strand, within ECD_02766 at 2913.234 kb on + strand, within ECD_02766 at 2913.271 kb on - strand, within ECD_02766 at 2913.359 kb on + strand, within ECD_02766
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,909,539 - ECD_02763 0.87 -0.1 2,909,542 + ECD_02763 0.87 +0.1 2,909,547 - ECD_02763 0.88 +0.2 2,910,499 + +0.4 2,910,630 - -1.5 2,910,707 + ECD_02765 0.10 -0.7 2,910,873 - ECD_02765 0.19 -0.2 2,910,981 - ECD_02765 0.24 -1.6 2,910,981 - ECD_02765 0.24 -1.0 2,911,026 + ECD_02765 0.26 -0.3 2,911,027 - ECD_02765 0.26 -1.1 2,911,027 - ECD_02765 0.26 -0.8 2,911,027 - ECD_02765 0.26 -1.1 2,911,156 - ECD_02765 0.33 -1.5 2,911,160 - ECD_02765 0.33 -0.6 2,911,168 - ECD_02765 0.33 +0.4 2,911,206 - ECD_02765 0.35 -0.6 2,911,275 - ECD_02765 0.39 -0.9 2,911,283 + ECD_02765 0.39 -0.6 2,911,284 - ECD_02765 0.39 -0.9 2,911,284 - ECD_02765 0.39 -0.6 2,911,284 - ECD_02765 0.39 -1.8 2,911,284 - ECD_02765 0.39 -1.6 2,911,314 + ECD_02765 0.41 -2.9 2,911,623 - ECD_02765 0.56 -2.4 2,911,825 - ECD_02765 0.66 -0.9 2,911,936 - ECD_02765 0.72 +0.1 2,911,950 - ECD_02765 0.73 +1.0 2,912,481 + -0.6 2,912,482 - -2.9 2,912,604 + +0.9 2,912,604 + +0.7 2,912,604 + -0.6 2,912,604 + -0.4 2,912,604 + +0.2 2,912,604 + +0.0 2,912,605 - -0.1 2,912,666 + -0.5 2,912,667 - -0.0 2,912,693 + +0.1 2,912,695 + -0.2 2,912,743 - -0.1 2,912,787 + -0.4 2,912,787 + -0.5 2,912,833 + -0.6 2,912,975 + ECD_02766 0.27 +0.2 2,912,995 + ECD_02766 0.30 +0.5 2,912,995 + ECD_02766 0.30 +0.7 2,912,995 + ECD_02766 0.30 -0.2 2,912,995 + ECD_02766 0.30 +0.0 2,912,996 - ECD_02766 0.30 +0.1 2,913,009 + ECD_02766 0.31 +0.4 2,913,020 - ECD_02766 0.33 +0.4 2,913,020 - ECD_02766 0.33 -0.2 2,913,042 - ECD_02766 0.36 -0.1 2,913,050 + ECD_02766 0.37 +0.9 2,913,050 + ECD_02766 0.37 +0.4 2,913,050 + ECD_02766 0.37 +0.1 2,913,050 + ECD_02766 0.37 +0.8 2,913,050 + ECD_02766 0.37 -0.2 2,913,050 + ECD_02766 0.37 -0.2 2,913,050 + ECD_02766 0.37 +0.0 2,913,050 + ECD_02766 0.37 -0.5 2,913,050 + ECD_02766 0.37 +0.2 2,913,050 + ECD_02766 0.37 +0.9 2,913,051 - ECD_02766 0.37 -0.7 2,913,051 - ECD_02766 0.37 +0.1 2,913,051 - ECD_02766 0.37 -0.4 2,913,051 - ECD_02766 0.37 -0.0 2,913,051 - ECD_02766 0.37 +0.5 2,913,051 - ECD_02766 0.37 -0.3 2,913,051 - ECD_02766 0.37 -0.1 2,913,121 + ECD_02766 0.46 -0.0 2,913,122 - ECD_02766 0.46 -0.3 2,913,217 + ECD_02766 0.59 -0.5 2,913,217 + ECD_02766 0.59 -0.2 2,913,218 - ECD_02766 0.59 +0.5 2,913,234 + ECD_02766 0.61 -0.0 2,913,271 - ECD_02766 0.66 -0.3 2,913,359 + ECD_02766 0.77 -1.2
Or see this region's nucleotide sequence