Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02727 and ECD_02728 are separated by 39 nucleotides ECD_02728 and ECD_02729 overlap by 20 nucleotides ECD_02729 and ECD_02730 are separated by 242 nucleotides
ECD_02727: ECD_02727 - flavodoxin 2, at 2,870,715 to 2,871,236
_02727
ECD_02728: ECD_02728 - toxin of CptAB toxin-antitoxin pair, at 2,871,276 to 2,871,683
_02728
ECD_02729: ECD_02729 - flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair, at 2,871,664 to 2,871,930
_02729
ECD_02730: ECD_02730 - iron-sulfur cluster repair protein, plumbagin resistance, at 2,872,173 to 2,873,153
_02730
Position (kb)
2871
2872 Strain fitness (log2 ratio)
-2
-1
0
1 at 2870.671 kb on + strand at 2870.671 kb on + strand at 2870.671 kb on + strand at 2870.676 kb on + strand at 2870.676 kb on + strand at 2870.677 kb on - strand at 2870.677 kb on - strand at 2870.677 kb on - strand at 2870.677 kb on - strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.714 kb on + strand at 2870.733 kb on + strand at 2870.751 kb on + strand at 2870.751 kb on + strand at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.839 kb on + strand, within ECD_02727 at 2870.850 kb on + strand, within ECD_02727 at 2870.851 kb on - strand, within ECD_02727 at 2870.967 kb on + strand, within ECD_02727 at 2870.968 kb on - strand, within ECD_02727 at 2871.092 kb on + strand, within ECD_02727 at 2871.155 kb on + strand, within ECD_02727 at 2871.155 kb on + strand, within ECD_02727 at 2871.162 kb on + strand, within ECD_02727 at 2871.162 kb on + strand, within ECD_02727 at 2871.183 kb on - strand, within ECD_02727 at 2871.183 kb on - strand, within ECD_02727 at 2871.183 kb on - strand, within ECD_02727 at 2871.228 kb on + strand at 2871.228 kb on + strand at 2871.228 kb on + strand at 2871.229 kb on - strand at 2871.229 kb on - strand at 2871.229 kb on - strand at 2871.251 kb on + strand at 2871.258 kb on + strand at 2871.258 kb on + strand at 2871.258 kb on + strand at 2871.258 kb on + strand at 2871.259 kb on - strand at 2871.259 kb on - strand at 2871.259 kb on - strand at 2871.312 kb on + strand at 2871.357 kb on + strand, within ECD_02728 at 2871.388 kb on - strand, within ECD_02728 at 2871.388 kb on - strand, within ECD_02728 at 2871.410 kb on + strand, within ECD_02728 at 2871.411 kb on - strand, within ECD_02728 at 2871.411 kb on - strand, within ECD_02728 at 2871.411 kb on - strand, within ECD_02728 at 2871.483 kb on - strand, within ECD_02728 at 2871.503 kb on + strand, within ECD_02728 at 2871.503 kb on + strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.506 kb on + strand, within ECD_02728 at 2871.507 kb on - strand, within ECD_02728 at 2871.549 kb on + strand, within ECD_02728 at 2871.549 kb on + strand, within ECD_02728 at 2871.550 kb on - strand, within ECD_02728 at 2871.571 kb on + strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.599 kb on + strand, within ECD_02728 at 2871.744 kb on + strand, within ECD_02729 at 2871.765 kb on + strand, within ECD_02729 at 2871.836 kb on + strand, within ECD_02729 at 2871.837 kb on - strand, within ECD_02729 at 2871.837 kb on - strand, within ECD_02729 at 2871.882 kb on + strand, within ECD_02729 at 2871.966 kb on - strand at 2871.966 kb on - strand at 2871.970 kb on + strand at 2871.970 kb on + strand at 2871.970 kb on + strand at 2871.971 kb on - strand at 2871.971 kb on - strand at 2871.971 kb on - strand at 2871.971 kb on - strand at 2872.001 kb on - strand at 2872.119 kb on + strand at 2872.119 kb on + strand at 2872.119 kb on + strand at 2872.119 kb on + strand at 2872.119 kb on + strand at 2872.128 kb on + strand at 2872.141 kb on + strand at 2872.144 kb on + strand at 2872.144 kb on + strand at 2872.144 kb on + strand at 2872.144 kb on + strand at 2872.144 kb on + strand at 2872.169 kb on + strand at 2872.169 kb on + strand at 2872.169 kb on + strand at 2872.169 kb on + strand at 2872.169 kb on + strand at 2872.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,870,671 + +0.3 2,870,671 + +1.2 2,870,671 + -0.4 2,870,676 + -0.8 2,870,676 + -0.5 2,870,677 - +0.6 2,870,677 - -0.3 2,870,677 - +0.2 2,870,677 - +0.4 2,870,709 + +0.3 2,870,709 + +0.4 2,870,709 + +0.5 2,870,709 + -0.2 2,870,709 + -0.1 2,870,710 - +0.5 2,870,710 - -0.2 2,870,710 - +0.8 2,870,710 - -0.3 2,870,710 - -0.3 2,870,710 - -0.2 2,870,710 - +1.5 2,870,710 - -0.9 2,870,710 - -0.4 2,870,710 - +0.5 2,870,710 - +0.5 2,870,714 + -0.4 2,870,733 + +0.1 2,870,751 + +0.2 2,870,751 + -0.5 2,870,809 + ECD_02727 0.18 +0.3 2,870,809 + ECD_02727 0.18 +0.3 2,870,809 + ECD_02727 0.18 -2.2 2,870,809 + ECD_02727 0.18 -0.2 2,870,809 + ECD_02727 0.18 -0.6 2,870,809 + ECD_02727 0.18 +0.1 2,870,809 + ECD_02727 0.18 +0.6 2,870,809 + ECD_02727 0.18 -1.0 2,870,809 + ECD_02727 0.18 -0.1 2,870,809 + ECD_02727 0.18 -0.0 2,870,809 + ECD_02727 0.18 -0.8 2,870,809 + ECD_02727 0.18 +0.1 2,870,809 + ECD_02727 0.18 +0.5 2,870,810 - ECD_02727 0.18 -0.2 2,870,810 - ECD_02727 0.18 +0.3 2,870,810 - ECD_02727 0.18 -1.2 2,870,810 - ECD_02727 0.18 -1.0 2,870,810 - ECD_02727 0.18 +0.4 2,870,839 + ECD_02727 0.24 -0.1 2,870,850 + ECD_02727 0.26 +0.9 2,870,851 - ECD_02727 0.26 +0.1 2,870,967 + ECD_02727 0.48 +1.5 2,870,968 - ECD_02727 0.48 -0.7 2,871,092 + ECD_02727 0.72 -0.4 2,871,155 + ECD_02727 0.84 -0.1 2,871,155 + ECD_02727 0.84 -1.0 2,871,162 + ECD_02727 0.86 +0.2 2,871,162 + ECD_02727 0.86 -0.2 2,871,183 - ECD_02727 0.90 -0.2 2,871,183 - ECD_02727 0.90 -0.7 2,871,183 - ECD_02727 0.90 -0.1 2,871,228 + +0.5 2,871,228 + +0.1 2,871,228 + -0.1 2,871,229 - +0.4 2,871,229 - -0.1 2,871,229 - -0.1 2,871,251 + +0.8 2,871,258 + +0.2 2,871,258 + +0.4 2,871,258 + +0.4 2,871,258 + +0.4 2,871,259 - +0.0 2,871,259 - +0.2 2,871,259 - +0.1 2,871,312 + +0.9 2,871,357 + ECD_02728 0.20 +0.6 2,871,388 - ECD_02728 0.27 +0.6 2,871,388 - ECD_02728 0.27 -0.0 2,871,410 + ECD_02728 0.33 -0.2 2,871,411 - ECD_02728 0.33 +0.0 2,871,411 - ECD_02728 0.33 +0.7 2,871,411 - ECD_02728 0.33 -0.2 2,871,483 - ECD_02728 0.51 -0.2 2,871,503 + ECD_02728 0.56 +0.2 2,871,503 + ECD_02728 0.56 -0.3 2,871,504 - ECD_02728 0.56 +0.3 2,871,504 - ECD_02728 0.56 -0.4 2,871,504 - ECD_02728 0.56 -1.4 2,871,504 - ECD_02728 0.56 -0.3 2,871,506 + ECD_02728 0.56 +0.1 2,871,507 - ECD_02728 0.57 +0.4 2,871,549 + ECD_02728 0.67 +0.8 2,871,549 + ECD_02728 0.67 +0.0 2,871,550 - ECD_02728 0.67 +0.3 2,871,571 + ECD_02728 0.72 +0.1 2,871,572 - ECD_02728 0.73 +1.0 2,871,572 - ECD_02728 0.73 -0.1 2,871,572 - ECD_02728 0.73 -0.4 2,871,572 - ECD_02728 0.73 -0.1 2,871,572 - ECD_02728 0.73 -0.1 2,871,599 + ECD_02728 0.79 -0.6 2,871,744 + ECD_02729 0.30 -1.2 2,871,765 + ECD_02729 0.38 -1.2 2,871,836 + ECD_02729 0.64 -2.0 2,871,837 - ECD_02729 0.65 -1.3 2,871,837 - ECD_02729 0.65 -0.5 2,871,882 + ECD_02729 0.82 +0.4 2,871,966 - +0.3 2,871,966 - +0.1 2,871,970 + -0.9 2,871,970 + -0.2 2,871,970 + -0.7 2,871,971 - -0.1 2,871,971 - +0.4 2,871,971 - -0.6 2,871,971 - -0.9 2,872,001 - +0.3 2,872,119 + +0.2 2,872,119 + +1.4 2,872,119 + -1.4 2,872,119 + -0.3 2,872,119 + -0.1 2,872,128 + +0.1 2,872,141 + +0.1 2,872,144 + -0.1 2,872,144 + -0.8 2,872,144 + -0.2 2,872,144 + -0.7 2,872,144 + +0.8 2,872,169 + +0.3 2,872,169 + +0.1 2,872,169 + -0.3 2,872,169 + +0.8 2,872,169 + -0.6 2,872,169 + +0.5
Or see this region's nucleotide sequence