Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02642 and ECD_02643 are separated by 21 nucleotides ECD_02643 and ECD_02644 are separated by 54 nucleotides ECD_02644 and ECD_02646 are separated by 256 nucleotides ECD_02646 and ECD_02647 overlap by 82 nucleotides
ECD_02642: ECD_02642 - L-serine dehydratase 2, at 2,762,166 to 2,763,533
_02642
ECD_02643: ECD_02643 - Ssb-binding protein, misidentified as ExoIX, at 2,763,555 to 2,764,400
_02643
ECD_02644: ECD_02644 - L-1,2-propanediol oxidoreductase, at 2,764,455 to 2,765,606
_02644
ECD_02646: ECD_02646 - IS1 protein InsB, at 2,765,863 to 2,766,366
_02646
ECD_02647: ECD_02647 - IS1 protein InsA, at 2,766,285 to 2,766,560
_02647
Position (kb)
2764
2765
2766 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2763.461 kb on + strand at 2763.461 kb on + strand at 2763.462 kb on - strand at 2763.467 kb on + strand at 2763.467 kb on + strand at 2763.467 kb on + strand at 2763.467 kb on + strand at 2763.467 kb on + strand at 2763.467 kb on + strand at 2763.468 kb on - strand at 2763.468 kb on - strand at 2763.662 kb on + strand, within ECD_02643 at 2763.684 kb on - strand, within ECD_02643 at 2763.756 kb on - strand, within ECD_02643 at 2763.810 kb on - strand, within ECD_02643 at 2763.841 kb on - strand, within ECD_02643 at 2763.896 kb on - strand, within ECD_02643 at 2764.025 kb on + strand, within ECD_02643 at 2764.025 kb on + strand, within ECD_02643 at 2764.026 kb on - strand, within ECD_02643 at 2764.026 kb on - strand, within ECD_02643 at 2764.026 kb on - strand, within ECD_02643 at 2764.032 kb on + strand, within ECD_02643 at 2764.032 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.057 kb on + strand, within ECD_02643 at 2764.058 kb on - strand, within ECD_02643 at 2764.058 kb on - strand, within ECD_02643 at 2764.058 kb on - strand, within ECD_02643 at 2764.058 kb on - strand, within ECD_02643 at 2764.058 kb on - strand, within ECD_02643 at 2764.058 kb on - strand, within ECD_02643 at 2764.061 kb on + strand, within ECD_02643 at 2764.062 kb on - strand, within ECD_02643 at 2764.062 kb on - strand, within ECD_02643 at 2764.062 kb on - strand, within ECD_02643 at 2764.071 kb on + strand, within ECD_02643 at 2764.071 kb on + strand, within ECD_02643 at 2764.072 kb on - strand, within ECD_02643 at 2764.104 kb on - strand, within ECD_02643 at 2764.104 kb on - strand, within ECD_02643 at 2764.252 kb on + strand, within ECD_02643 at 2764.254 kb on + strand, within ECD_02643 at 2764.254 kb on + strand, within ECD_02643 at 2764.254 kb on + strand, within ECD_02643 at 2764.254 kb on + strand, within ECD_02643 at 2764.255 kb on - strand, within ECD_02643 at 2764.255 kb on - strand, within ECD_02643 at 2764.255 kb on - strand, within ECD_02643 at 2764.255 kb on - strand, within ECD_02643 at 2764.307 kb on + strand, within ECD_02643 at 2764.345 kb on + strand at 2764.467 kb on - strand at 2764.472 kb on - strand at 2764.479 kb on + strand at 2764.480 kb on - strand at 2764.480 kb on - strand at 2764.485 kb on - strand at 2764.573 kb on - strand, within ECD_02644 at 2764.647 kb on - strand, within ECD_02644 at 2764.647 kb on - strand, within ECD_02644 at 2764.667 kb on + strand, within ECD_02644 at 2764.667 kb on + strand, within ECD_02644 at 2764.667 kb on + strand, within ECD_02644 at 2764.668 kb on - strand, within ECD_02644 at 2764.668 kb on - strand, within ECD_02644 at 2764.668 kb on - strand, within ECD_02644 at 2764.668 kb on - strand, within ECD_02644 at 2764.668 kb on - strand, within ECD_02644 at 2764.668 kb on - strand, within ECD_02644 at 2764.709 kb on - strand, within ECD_02644 at 2764.734 kb on - strand, within ECD_02644 at 2764.734 kb on - strand, within ECD_02644 at 2764.736 kb on - strand, within ECD_02644 at 2764.736 kb on - strand, within ECD_02644 at 2764.736 kb on - strand, within ECD_02644 at 2764.736 kb on - strand, within ECD_02644 at 2764.788 kb on - strand, within ECD_02644 at 2764.788 kb on - strand, within ECD_02644 at 2764.788 kb on - strand, within ECD_02644 at 2764.789 kb on + strand, within ECD_02644 at 2764.790 kb on - strand, within ECD_02644 at 2764.815 kb on - strand, within ECD_02644 at 2764.864 kb on + strand, within ECD_02644 at 2764.864 kb on + strand, within ECD_02644 at 2764.865 kb on - strand, within ECD_02644 at 2764.865 kb on - strand, within ECD_02644 at 2764.898 kb on + strand, within ECD_02644 at 2764.949 kb on + strand, within ECD_02644 at 2764.950 kb on - strand, within ECD_02644 at 2764.989 kb on - strand, within ECD_02644 at 2764.991 kb on + strand, within ECD_02644 at 2764.991 kb on + strand, within ECD_02644 at 2764.991 kb on + strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.993 kb on + strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2765.004 kb on - strand, within ECD_02644 at 2765.004 kb on - strand, within ECD_02644 at 2765.054 kb on + strand, within ECD_02644 at 2765.079 kb on - strand, within ECD_02644 at 2765.152 kb on + strand, within ECD_02644 at 2765.152 kb on + strand, within ECD_02644 at 2765.153 kb on - strand, within ECD_02644 at 2765.153 kb on - strand, within ECD_02644 at 2765.153 kb on - strand, within ECD_02644 at 2765.157 kb on - strand, within ECD_02644 at 2765.208 kb on + strand, within ECD_02644 at 2765.294 kb on + strand, within ECD_02644 at 2765.295 kb on - strand, within ECD_02644 at 2765.295 kb on - strand, within ECD_02644 at 2765.301 kb on - strand, within ECD_02644 at 2765.301 kb on - strand, within ECD_02644 at 2765.359 kb on - strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.404 kb on - strand, within ECD_02644 at 2765.414 kb on - strand, within ECD_02644 at 2765.448 kb on - strand, within ECD_02644 at 2765.490 kb on - strand, within ECD_02644 at 2765.653 kb on + strand at 2765.654 kb on - strand at 2765.654 kb on - strand at 2765.676 kb on + strand at 2765.738 kb on - strand at 2765.824 kb on - strand at 2765.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,763,461 + -0.3 2,763,461 + -0.1 2,763,462 - -0.2 2,763,467 + -1.0 2,763,467 + +0.1 2,763,467 + +1.2 2,763,467 + +0.3 2,763,467 + +0.6 2,763,467 + +0.6 2,763,468 - +0.6 2,763,468 - +0.6 2,763,662 + ECD_02643 0.13 -0.1 2,763,684 - ECD_02643 0.15 +0.4 2,763,756 - ECD_02643 0.24 +0.7 2,763,810 - ECD_02643 0.30 -0.3 2,763,841 - ECD_02643 0.34 +0.5 2,763,896 - ECD_02643 0.40 +0.1 2,764,025 + ECD_02643 0.56 -0.9 2,764,025 + ECD_02643 0.56 +0.3 2,764,026 - ECD_02643 0.56 +0.2 2,764,026 - ECD_02643 0.56 -0.6 2,764,026 - ECD_02643 0.56 +0.7 2,764,032 + ECD_02643 0.56 +1.0 2,764,032 + ECD_02643 0.56 +0.3 2,764,057 + ECD_02643 0.59 +0.2 2,764,057 + ECD_02643 0.59 -0.4 2,764,057 + ECD_02643 0.59 -0.8 2,764,057 + ECD_02643 0.59 -0.4 2,764,057 + ECD_02643 0.59 +0.4 2,764,057 + ECD_02643 0.59 +0.4 2,764,057 + ECD_02643 0.59 +0.5 2,764,058 - ECD_02643 0.59 -0.2 2,764,058 - ECD_02643 0.59 +0.1 2,764,058 - ECD_02643 0.59 -0.4 2,764,058 - ECD_02643 0.59 +0.8 2,764,058 - ECD_02643 0.59 -0.1 2,764,058 - ECD_02643 0.59 +0.8 2,764,061 + ECD_02643 0.60 -0.2 2,764,062 - ECD_02643 0.60 -0.4 2,764,062 - ECD_02643 0.60 -0.2 2,764,062 - ECD_02643 0.60 +0.2 2,764,071 + ECD_02643 0.61 +0.1 2,764,071 + ECD_02643 0.61 +0.5 2,764,072 - ECD_02643 0.61 +0.4 2,764,104 - ECD_02643 0.65 +0.5 2,764,104 - ECD_02643 0.65 +0.5 2,764,252 + ECD_02643 0.82 -0.0 2,764,254 + ECD_02643 0.83 +0.3 2,764,254 + ECD_02643 0.83 +0.2 2,764,254 + ECD_02643 0.83 +0.1 2,764,254 + ECD_02643 0.83 -0.2 2,764,255 - ECD_02643 0.83 +1.3 2,764,255 - ECD_02643 0.83 +0.6 2,764,255 - ECD_02643 0.83 +0.3 2,764,255 - ECD_02643 0.83 -0.1 2,764,307 + ECD_02643 0.89 -0.4 2,764,345 + -0.3 2,764,467 - -0.4 2,764,472 - +0.3 2,764,479 + +1.1 2,764,480 - +0.5 2,764,480 - +0.2 2,764,485 - +0.1 2,764,573 - ECD_02644 0.10 +0.2 2,764,647 - ECD_02644 0.17 -0.3 2,764,647 - ECD_02644 0.17 -0.0 2,764,667 + ECD_02644 0.18 -0.5 2,764,667 + ECD_02644 0.18 -0.0 2,764,667 + ECD_02644 0.18 -3.0 2,764,668 - ECD_02644 0.18 -1.1 2,764,668 - ECD_02644 0.18 -0.2 2,764,668 - ECD_02644 0.18 -0.4 2,764,668 - ECD_02644 0.18 +0.6 2,764,668 - ECD_02644 0.18 +0.5 2,764,668 - ECD_02644 0.18 -0.4 2,764,709 - ECD_02644 0.22 -0.1 2,764,734 - ECD_02644 0.24 +0.2 2,764,734 - ECD_02644 0.24 +0.0 2,764,736 - ECD_02644 0.24 +0.6 2,764,736 - ECD_02644 0.24 -0.0 2,764,736 - ECD_02644 0.24 +0.1 2,764,736 - ECD_02644 0.24 +0.6 2,764,788 - ECD_02644 0.29 +1.5 2,764,788 - ECD_02644 0.29 +0.3 2,764,788 - ECD_02644 0.29 -0.0 2,764,789 + ECD_02644 0.29 +0.4 2,764,790 - ECD_02644 0.29 +0.2 2,764,815 - ECD_02644 0.31 +0.5 2,764,864 + ECD_02644 0.36 -0.3 2,764,864 + ECD_02644 0.36 +0.5 2,764,865 - ECD_02644 0.36 +1.2 2,764,865 - ECD_02644 0.36 +0.7 2,764,898 + ECD_02644 0.38 +1.4 2,764,949 + ECD_02644 0.43 -0.8 2,764,950 - ECD_02644 0.43 +1.4 2,764,989 - ECD_02644 0.46 +0.9 2,764,991 + ECD_02644 0.47 -0.6 2,764,991 + ECD_02644 0.47 -0.3 2,764,991 + ECD_02644 0.47 -0.1 2,764,992 - ECD_02644 0.47 +2.1 2,764,992 - ECD_02644 0.47 +0.0 2,764,992 - ECD_02644 0.47 +0.2 2,764,992 - ECD_02644 0.47 +0.0 2,764,992 - ECD_02644 0.47 -0.6 2,764,992 - ECD_02644 0.47 +0.7 2,764,992 - ECD_02644 0.47 +0.4 2,764,992 - ECD_02644 0.47 -0.0 2,764,992 - ECD_02644 0.47 -0.5 2,764,993 + ECD_02644 0.47 -1.1 2,764,994 - ECD_02644 0.47 +0.6 2,764,994 - ECD_02644 0.47 +0.0 2,764,994 - ECD_02644 0.47 +0.7 2,764,994 - ECD_02644 0.47 -0.4 2,764,994 - ECD_02644 0.47 +0.0 2,764,994 - ECD_02644 0.47 -0.6 2,765,004 - ECD_02644 0.48 -0.5 2,765,004 - ECD_02644 0.48 +0.5 2,765,054 + ECD_02644 0.52 -0.5 2,765,079 - ECD_02644 0.54 +0.6 2,765,152 + ECD_02644 0.61 -0.0 2,765,152 + ECD_02644 0.61 -0.1 2,765,153 - ECD_02644 0.61 +0.0 2,765,153 - ECD_02644 0.61 +0.5 2,765,153 - ECD_02644 0.61 +1.0 2,765,157 - ECD_02644 0.61 +0.4 2,765,208 + ECD_02644 0.65 +0.7 2,765,294 + ECD_02644 0.73 +0.8 2,765,295 - ECD_02644 0.73 +0.2 2,765,295 - ECD_02644 0.73 +1.2 2,765,301 - ECD_02644 0.73 +1.1 2,765,301 - ECD_02644 0.73 -0.4 2,765,359 - ECD_02644 0.78 -0.3 2,765,384 + ECD_02644 0.81 +0.4 2,765,384 + ECD_02644 0.81 -0.3 2,765,384 + ECD_02644 0.81 -0.7 2,765,384 + ECD_02644 0.81 +0.1 2,765,385 - ECD_02644 0.81 +0.3 2,765,385 - ECD_02644 0.81 -0.1 2,765,385 - ECD_02644 0.81 +0.2 2,765,385 - ECD_02644 0.81 -0.3 2,765,385 - ECD_02644 0.81 +0.8 2,765,385 - ECD_02644 0.81 -0.3 2,765,404 - ECD_02644 0.82 -1.1 2,765,414 - ECD_02644 0.83 +0.6 2,765,448 - ECD_02644 0.86 +0.4 2,765,490 - ECD_02644 0.90 -0.2 2,765,653 + +0.3 2,765,654 - -0.1 2,765,654 - +0.3 2,765,676 + -0.3 2,765,738 - +0.4 2,765,824 - -0.1 2,765,879 - -1.5
Or see this region's nucleotide sequence