Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02604 and ECD_02607 are separated by 609 nucleotides ECD_02607 and ECD_02608 are separated by 73 nucleotides
ECD_02604: ECD_02604 - putative transposase insL for insertion sequence IS186, at 2,718,018 to 2,719,130
_02604
ECD_02607: ECD_02607 - phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent, at 2,719,740 to 2,720,474
_02607
ECD_02608: ECD_02608 - sulfite reductase, beta subunit, NAD(P)-binding, heme-binding, at 2,720,548 to 2,722,260
_02608
Position (kb)
2719
2720
2721 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2719.298 kb on + strand at 2719.426 kb on - strand at 2719.431 kb on - strand at 2719.443 kb on + strand at 2719.443 kb on + strand at 2719.444 kb on - strand at 2719.463 kb on - strand at 2719.530 kb on + strand at 2719.530 kb on + strand at 2719.531 kb on - strand at 2719.531 kb on - strand at 2719.545 kb on + strand at 2719.545 kb on + strand at 2719.546 kb on - strand at 2719.629 kb on - strand at 2719.737 kb on + strand at 2719.737 kb on + strand at 2719.827 kb on - strand, within ECD_02607 at 2720.083 kb on + strand, within ECD_02607 at 2720.329 kb on - strand, within ECD_02607 at 2720.475 kb on - strand at 2720.475 kb on - strand at 2720.529 kb on + strand at 2720.529 kb on + strand at 2720.608 kb on - strand at 2720.708 kb on + strand at 2720.709 kb on - strand at 2720.709 kb on - strand at 2720.709 kb on - strand at 2720.709 kb on - strand at 2720.760 kb on - strand, within ECD_02608 at 2720.834 kb on - strand, within ECD_02608 at 2720.879 kb on - strand, within ECD_02608 at 2720.899 kb on - strand, within ECD_02608 at 2721.053 kb on - strand, within ECD_02608 at 2721.199 kb on - strand, within ECD_02608 at 2721.199 kb on - strand, within ECD_02608 at 2721.252 kb on - strand, within ECD_02608 at 2721.252 kb on - strand, within ECD_02608 at 2721.336 kb on - strand, within ECD_02608 at 2721.336 kb on - strand, within ECD_02608 at 2721.418 kb on - strand, within ECD_02608 at 2721.435 kb on - strand, within ECD_02608 at 2721.461 kb on + strand, within ECD_02608
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,719,298 + +1.8 2,719,426 - -2.5 2,719,431 - +0.1 2,719,443 + -0.3 2,719,443 + +0.2 2,719,444 - -0.6 2,719,463 - +0.4 2,719,530 + +0.1 2,719,530 + +0.3 2,719,531 - +1.0 2,719,531 - +0.5 2,719,545 + +1.0 2,719,545 + +0.5 2,719,546 - +0.6 2,719,629 - +0.1 2,719,737 + +0.3 2,719,737 + +0.9 2,719,827 - ECD_02607 0.12 -1.7 2,720,083 + ECD_02607 0.47 -1.0 2,720,329 - ECD_02607 0.80 -1.8 2,720,475 - +0.1 2,720,475 - +0.5 2,720,529 + +0.6 2,720,529 + -0.1 2,720,608 - -0.5 2,720,708 + -0.9 2,720,709 - -0.8 2,720,709 - -0.4 2,720,709 - -0.2 2,720,709 - -1.0 2,720,760 - ECD_02608 0.12 -1.0 2,720,834 - ECD_02608 0.17 -0.2 2,720,879 - ECD_02608 0.19 +0.2 2,720,899 - ECD_02608 0.20 -0.4 2,721,053 - ECD_02608 0.29 -1.2 2,721,199 - ECD_02608 0.38 -0.8 2,721,199 - ECD_02608 0.38 +0.3 2,721,252 - ECD_02608 0.41 -0.7 2,721,252 - ECD_02608 0.41 +0.7 2,721,336 - ECD_02608 0.46 -1.0 2,721,336 - ECD_02608 0.46 -1.2 2,721,418 - ECD_02608 0.51 -0.6 2,721,435 - ECD_02608 0.52 +0.4 2,721,461 + ECD_02608 0.53 -0.3
Or see this region's nucleotide sequence