Strain Fitness in Escherichia coli BL21 around ECD_02607

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02604 and ECD_02607 are separated by 609 nucleotidesECD_02607 and ECD_02608 are separated by 73 nucleotides ECD_02604: ECD_02604 - putative transposase insL for insertion sequence IS186, at 2,718,018 to 2,719,130 _02604 ECD_02607: ECD_02607 - phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent, at 2,719,740 to 2,720,474 _02607 ECD_02608: ECD_02608 - sulfite reductase, beta subunit, NAD(P)-binding, heme-binding, at 2,720,548 to 2,722,260 _02608 Position (kb) 2719 2720 2721Strain fitness (log2 ratio) -2 -1 0 1 2at 2719.298 kb on + strandat 2719.426 kb on - strandat 2719.431 kb on - strandat 2719.443 kb on + strandat 2719.443 kb on + strandat 2719.444 kb on - strandat 2719.463 kb on - strandat 2719.530 kb on + strandat 2719.530 kb on + strandat 2719.531 kb on - strandat 2719.531 kb on - strandat 2719.545 kb on + strandat 2719.545 kb on + strandat 2719.546 kb on - strandat 2719.629 kb on - strandat 2719.737 kb on + strandat 2719.737 kb on + strandat 2719.827 kb on - strand, within ECD_02607at 2720.083 kb on + strand, within ECD_02607at 2720.329 kb on - strand, within ECD_02607at 2720.475 kb on - strandat 2720.475 kb on - strandat 2720.529 kb on + strandat 2720.529 kb on + strandat 2720.608 kb on - strandat 2720.708 kb on + strandat 2720.709 kb on - strandat 2720.709 kb on - strandat 2720.709 kb on - strandat 2720.709 kb on - strandat 2720.760 kb on - strand, within ECD_02608at 2720.834 kb on - strand, within ECD_02608at 2720.879 kb on - strand, within ECD_02608at 2720.899 kb on - strand, within ECD_02608at 2721.053 kb on - strand, within ECD_02608at 2721.199 kb on - strand, within ECD_02608at 2721.199 kb on - strand, within ECD_02608at 2721.252 kb on - strand, within ECD_02608at 2721.252 kb on - strand, within ECD_02608at 2721.336 kb on - strand, within ECD_02608at 2721.336 kb on - strand, within ECD_02608at 2721.418 kb on - strand, within ECD_02608at 2721.435 kb on - strand, within ECD_02608at 2721.461 kb on + strand, within ECD_02608

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,719,298 + +1.8
2,719,426 - -2.5
2,719,431 - +0.1
2,719,443 + -0.3
2,719,443 + +0.2
2,719,444 - -0.6
2,719,463 - +0.4
2,719,530 + +0.1
2,719,530 + +0.3
2,719,531 - +1.0
2,719,531 - +0.5
2,719,545 + +1.0
2,719,545 + +0.5
2,719,546 - +0.6
2,719,629 - +0.1
2,719,737 + +0.3
2,719,737 + +0.9
2,719,827 - ECD_02607 0.12 -1.7
2,720,083 + ECD_02607 0.47 -1.0
2,720,329 - ECD_02607 0.80 -1.8
2,720,475 - +0.1
2,720,475 - +0.5
2,720,529 + +0.6
2,720,529 + -0.1
2,720,608 - -0.5
2,720,708 + -0.9
2,720,709 - -0.8
2,720,709 - -0.4
2,720,709 - -0.2
2,720,709 - -1.0
2,720,760 - ECD_02608 0.12 -1.0
2,720,834 - ECD_02608 0.17 -0.2
2,720,879 - ECD_02608 0.19 +0.2
2,720,899 - ECD_02608 0.20 -0.4
2,721,053 - ECD_02608 0.29 -1.2
2,721,199 - ECD_02608 0.38 -0.8
2,721,199 - ECD_02608 0.38 +0.3
2,721,252 - ECD_02608 0.41 -0.7
2,721,252 - ECD_02608 0.41 +0.7
2,721,336 - ECD_02608 0.46 -1.0
2,721,336 - ECD_02608 0.46 -1.2
2,721,418 - ECD_02608 0.51 -0.6
2,721,435 - ECD_02608 0.52 +0.4
2,721,461 + ECD_02608 0.53 -0.3

Or see this region's nucleotide sequence