Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02468 and ECD_02469 overlap by 16 nucleotides ECD_02469 and ECD_02470 are separated by 131 nucleotides
ECD_02468: ECD_02468 - quinolinate synthase, L-aspartate oxidase (B protein) subunit, at 2,577,020 to 2,578,642
_02468
ECD_02469: ECD_02469 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 2,578,627 to 2,579,364
_02469
ECD_02470: ECD_02470 - ATP-dependent RNA helicase, at 2,579,496 to 2,580,830
_02470
Position (kb)
2578
2579
2580 Strain fitness (log2 ratio)
-1
0
1 at 2577.651 kb on - strand, within ECD_02468 at 2577.739 kb on + strand, within ECD_02468 at 2577.764 kb on + strand, within ECD_02468 at 2577.943 kb on + strand, within ECD_02468 at 2577.943 kb on + strand, within ECD_02468 at 2577.944 kb on - strand, within ECD_02468 at 2577.965 kb on - strand, within ECD_02468 at 2578.004 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.074 kb on - strand, within ECD_02468 at 2578.074 kb on - strand, within ECD_02468 at 2578.075 kb on + strand, within ECD_02468 at 2578.075 kb on + strand, within ECD_02468 at 2578.089 kb on + strand, within ECD_02468 at 2578.089 kb on + strand, within ECD_02468 at 2578.130 kb on + strand, within ECD_02468 at 2578.130 kb on + strand, within ECD_02468 at 2578.131 kb on - strand, within ECD_02468 at 2578.161 kb on + strand, within ECD_02468 at 2578.211 kb on + strand, within ECD_02468 at 2578.246 kb on + strand, within ECD_02468 at 2578.270 kb on + strand, within ECD_02468 at 2578.271 kb on - strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.348 kb on - strand, within ECD_02468 at 2578.357 kb on + strand, within ECD_02468 at 2578.367 kb on + strand, within ECD_02468 at 2578.367 kb on + strand, within ECD_02468 at 2578.368 kb on - strand, within ECD_02468 at 2578.448 kb on + strand, within ECD_02468 at 2578.628 kb on + strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.632 kb on + strand at 2578.632 kb on + strand at 2578.633 kb on - strand at 2578.641 kb on - strand at 2578.641 kb on - strand at 2578.801 kb on + strand, within ECD_02469 at 2578.820 kb on - strand, within ECD_02469 at 2578.843 kb on - strand, within ECD_02469 at 2578.933 kb on - strand, within ECD_02469 at 2578.938 kb on + strand, within ECD_02469 at 2578.939 kb on - strand, within ECD_02469 at 2578.939 kb on - strand, within ECD_02469 at 2578.991 kb on + strand, within ECD_02469 at 2578.991 kb on + strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2579.012 kb on - strand, within ECD_02469 at 2579.024 kb on - strand, within ECD_02469 at 2579.230 kb on + strand, within ECD_02469 at 2579.265 kb on + strand, within ECD_02469 at 2579.352 kb on + strand at 2579.353 kb on - strand at 2579.353 kb on - strand at 2579.490 kb on + strand at 2579.801 kb on + strand, within ECD_02470 at 2579.841 kb on + strand, within ECD_02470 at 2579.841 kb on + strand, within ECD_02470 at 2579.841 kb on + strand, within ECD_02470 at 2579.842 kb on - strand, within ECD_02470 at 2579.844 kb on - strand, within ECD_02470 at 2579.913 kb on + strand, within ECD_02470 at 2579.913 kb on + strand, within ECD_02470 at 2579.914 kb on - strand, within ECD_02470 at 2579.914 kb on - strand, within ECD_02470 at 2579.914 kb on - strand, within ECD_02470 at 2579.978 kb on + strand, within ECD_02470 at 2579.979 kb on - strand, within ECD_02470 at 2580.014 kb on + strand, within ECD_02470 at 2580.014 kb on + strand, within ECD_02470 at 2580.324 kb on + strand, within ECD_02470
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,577,651 - ECD_02468 0.39 +0.5 2,577,739 + ECD_02468 0.44 -0.9 2,577,764 + ECD_02468 0.46 -0.1 2,577,943 + ECD_02468 0.57 -0.1 2,577,943 + ECD_02468 0.57 -0.1 2,577,944 - ECD_02468 0.57 -0.4 2,577,965 - ECD_02468 0.58 -0.3 2,578,004 + ECD_02468 0.61 +0.6 2,578,073 + ECD_02468 0.65 +0.4 2,578,073 + ECD_02468 0.65 -0.7 2,578,073 + ECD_02468 0.65 -0.2 2,578,074 - ECD_02468 0.65 -0.2 2,578,074 - ECD_02468 0.65 +0.8 2,578,075 + ECD_02468 0.65 -0.2 2,578,075 + ECD_02468 0.65 +0.7 2,578,089 + ECD_02468 0.66 -0.0 2,578,089 + ECD_02468 0.66 +0.2 2,578,130 + ECD_02468 0.68 +0.6 2,578,130 + ECD_02468 0.68 +0.2 2,578,131 - ECD_02468 0.68 -0.3 2,578,161 + ECD_02468 0.70 +0.8 2,578,211 + ECD_02468 0.73 -0.3 2,578,246 + ECD_02468 0.76 -0.1 2,578,270 + ECD_02468 0.77 +0.3 2,578,271 - ECD_02468 0.77 -1.0 2,578,323 + ECD_02468 0.80 +0.7 2,578,323 + ECD_02468 0.80 -0.2 2,578,323 + ECD_02468 0.80 -0.0 2,578,333 + ECD_02468 0.81 -0.7 2,578,333 + ECD_02468 0.81 +0.7 2,578,333 + ECD_02468 0.81 +0.1 2,578,333 + ECD_02468 0.81 -0.6 2,578,347 + ECD_02468 0.82 -0.1 2,578,347 + ECD_02468 0.82 +0.6 2,578,347 + ECD_02468 0.82 +0.2 2,578,348 - ECD_02468 0.82 -0.4 2,578,357 + ECD_02468 0.82 +0.7 2,578,367 + ECD_02468 0.83 +0.6 2,578,367 + ECD_02468 0.83 -0.4 2,578,368 - ECD_02468 0.83 +0.3 2,578,448 + ECD_02468 0.88 +0.5 2,578,628 + +0.7 2,578,629 - +0.0 2,578,629 - +0.5 2,578,629 - +0.4 2,578,629 - +0.4 2,578,629 - -0.6 2,578,632 + -0.3 2,578,632 + +0.1 2,578,633 - +0.2 2,578,641 - +0.2 2,578,641 - +0.8 2,578,801 + ECD_02469 0.24 +0.3 2,578,820 - ECD_02469 0.26 +0.0 2,578,843 - ECD_02469 0.29 -0.4 2,578,933 - ECD_02469 0.41 -0.2 2,578,938 + ECD_02469 0.42 -0.7 2,578,939 - ECD_02469 0.42 +0.6 2,578,939 - ECD_02469 0.42 -0.3 2,578,991 + ECD_02469 0.49 +0.1 2,578,991 + ECD_02469 0.49 +0.7 2,578,992 - ECD_02469 0.49 +0.0 2,578,992 - ECD_02469 0.49 -0.3 2,578,992 - ECD_02469 0.49 -0.8 2,578,992 - ECD_02469 0.49 -0.6 2,579,012 - ECD_02469 0.52 +1.3 2,579,024 - ECD_02469 0.54 -0.2 2,579,230 + ECD_02469 0.82 +0.2 2,579,265 + ECD_02469 0.86 -0.2 2,579,352 + +0.3 2,579,353 - -0.5 2,579,353 - -0.1 2,579,490 + +0.1 2,579,801 + ECD_02470 0.23 -0.6 2,579,841 + ECD_02470 0.26 -0.7 2,579,841 + ECD_02470 0.26 -0.7 2,579,841 + ECD_02470 0.26 +0.7 2,579,842 - ECD_02470 0.26 -1.3 2,579,844 - ECD_02470 0.26 -0.7 2,579,913 + ECD_02470 0.31 -0.4 2,579,913 + ECD_02470 0.31 -0.8 2,579,914 - ECD_02470 0.31 +0.3 2,579,914 - ECD_02470 0.31 +0.8 2,579,914 - ECD_02470 0.31 -0.7 2,579,978 + ECD_02470 0.36 -0.7 2,579,979 - ECD_02470 0.36 -1.5 2,580,014 + ECD_02470 0.39 -1.4 2,580,014 + ECD_02470 0.39 -0.5 2,580,324 + ECD_02470 0.62 -0.0
Or see this region's nucleotide sequence