Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02463 and ECD_02464 are separated by 197 nucleotides ECD_02464 and ECD_02465 overlap by 4 nucleotides ECD_02465 and ECD_02466 overlap by 1 nucleotides ECD_02466 and ECD_02467 are separated by 32 nucleotides
ECD_02463: ECD_02463 - back-translocating elongation factor EF4, GTPase, at 2,571,925 to 2,573,724
_02463
ECD_02464: ECD_02464 - SoxR iron-sulfur cluster reduction factor component, at 2,573,922 to 2,574,401
_02464
ECD_02465: ECD_02465 - anti-sigma E factor, binds RseA, at 2,574,398 to 2,575,354
_02465
ECD_02466: ECD_02466 - anti-sigma factor, at 2,575,354 to 2,576,004
_02466
ECD_02467: ECD_02467 - RNA polymerase sigma E factor, at 2,576,037 to 2,576,612
_02467
Position (kb)
2574
2575
2576 Strain fitness (log2 ratio)
-2
-1
0
1 at 2573.656 kb on - strand at 2573.696 kb on - strand at 2573.710 kb on - strand at 2573.730 kb on - strand at 2573.736 kb on - strand at 2573.820 kb on + strand at 2573.821 kb on - strand at 2573.825 kb on + strand at 2573.852 kb on + strand at 2573.852 kb on + strand at 2574.023 kb on + strand, within ECD_02464 at 2574.032 kb on - strand, within ECD_02464 at 2574.081 kb on + strand, within ECD_02464 at 2574.082 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.158 kb on - strand, within ECD_02464 at 2574.177 kb on - strand, within ECD_02464 at 2574.177 kb on - strand, within ECD_02464 at 2574.255 kb on - strand, within ECD_02464 at 2574.255 kb on - strand, within ECD_02464 at 2574.278 kb on + strand, within ECD_02464 at 2574.419 kb on - strand at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.595 kb on - strand, within ECD_02465 at 2574.662 kb on - strand, within ECD_02465 at 2574.764 kb on - strand, within ECD_02465 at 2574.764 kb on - strand, within ECD_02465 at 2574.888 kb on + strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.901 kb on + strand, within ECD_02465 at 2574.902 kb on - strand, within ECD_02465 at 2574.982 kb on - strand, within ECD_02465 at 2575.008 kb on + strand, within ECD_02465 at 2575.009 kb on - strand, within ECD_02465 at 2575.009 kb on - strand, within ECD_02465 at 2575.039 kb on - strand, within ECD_02465 at 2575.039 kb on - strand, within ECD_02465 at 2575.202 kb on - strand, within ECD_02465 at 2575.263 kb on - strand at 2575.263 kb on - strand at 2575.316 kb on - strand at 2575.356 kb on - strand at 2575.373 kb on - strand at 2575.397 kb on - strand at 2575.397 kb on - strand at 2575.507 kb on + strand, within ECD_02466
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,573,656 - +0.1 2,573,696 - -0.8 2,573,710 - -0.4 2,573,730 - +0.1 2,573,736 - +0.1 2,573,820 + +0.3 2,573,821 - +0.3 2,573,825 + +0.2 2,573,852 + +0.2 2,573,852 + +0.2 2,574,023 + ECD_02464 0.21 +1.0 2,574,032 - ECD_02464 0.23 -0.7 2,574,081 + ECD_02464 0.33 -0.0 2,574,082 - ECD_02464 0.33 -0.2 2,574,156 - ECD_02464 0.49 -0.2 2,574,156 - ECD_02464 0.49 -0.7 2,574,156 - ECD_02464 0.49 -0.1 2,574,158 - ECD_02464 0.49 +0.4 2,574,177 - ECD_02464 0.53 +0.2 2,574,177 - ECD_02464 0.53 -0.1 2,574,255 - ECD_02464 0.69 -0.7 2,574,255 - ECD_02464 0.69 +0.2 2,574,278 + ECD_02464 0.74 -0.9 2,574,419 - +0.4 2,574,500 - ECD_02465 0.11 -0.1 2,574,500 - ECD_02465 0.11 -0.6 2,574,500 - ECD_02465 0.11 -0.2 2,574,500 - ECD_02465 0.11 -0.2 2,574,500 - ECD_02465 0.11 -1.5 2,574,595 - ECD_02465 0.21 -0.8 2,574,662 - ECD_02465 0.28 -1.0 2,574,764 - ECD_02465 0.38 -0.5 2,574,764 - ECD_02465 0.38 -0.6 2,574,888 + ECD_02465 0.51 -1.3 2,574,889 - ECD_02465 0.51 -0.6 2,574,889 - ECD_02465 0.51 -2.0 2,574,889 - ECD_02465 0.51 -0.3 2,574,889 - ECD_02465 0.51 -0.1 2,574,889 - ECD_02465 0.51 -0.7 2,574,901 + ECD_02465 0.53 -1.0 2,574,902 - ECD_02465 0.53 -0.3 2,574,982 - ECD_02465 0.61 -0.4 2,575,008 + ECD_02465 0.64 +0.1 2,575,009 - ECD_02465 0.64 -0.9 2,575,009 - ECD_02465 0.64 +0.0 2,575,039 - ECD_02465 0.67 -0.6 2,575,039 - ECD_02465 0.67 -2.2 2,575,202 - ECD_02465 0.84 -0.4 2,575,263 - -0.9 2,575,263 - -0.4 2,575,316 - -0.6 2,575,356 - -0.9 2,575,373 - -2.4 2,575,397 - -1.1 2,575,397 - +0.8 2,575,507 + ECD_02466 0.24 -1.3
Or see this region's nucleotide sequence