Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02442 and ECD_02443 are separated by 197 nucleotides ECD_02443 and ECD_02444 are separated by 327 nucleotides
ECD_02442: ECD_02442 - putative DNA-binding transcriptional regulator, at 2,548,668 to 2,549,861
_02442
ECD_02443: ECD_02443 - serine hydroxymethyltransferase, at 2,550,059 to 2,551,312
_02443
ECD_02444: ECD_02444 - fused nitric oxide dioxygenase/dihydropteridine reductase 2, at 2,551,640 to 2,552,830
_02444
Position (kb)
2550
2551
2552 Strain fitness (log2 ratio)
-2
-1
0
1 at 2549.066 kb on + strand, within ECD_02442 at 2549.183 kb on - strand, within ECD_02442 at 2549.187 kb on + strand, within ECD_02442 at 2549.188 kb on - strand, within ECD_02442 at 2549.364 kb on + strand, within ECD_02442 at 2549.670 kb on + strand, within ECD_02442 at 2549.708 kb on + strand, within ECD_02442 at 2549.708 kb on + strand, within ECD_02442 at 2549.708 kb on + strand, within ECD_02442 at 2549.709 kb on - strand, within ECD_02442 at 2549.711 kb on + strand, within ECD_02442 at 2549.794 kb on + strand at 2549.794 kb on + strand at 2549.826 kb on + strand at 2549.832 kb on + strand at 2549.833 kb on - strand at 2549.964 kb on + strand at 2550.067 kb on - strand at 2550.417 kb on - strand, within ECD_02443 at 2550.644 kb on - strand, within ECD_02443 at 2550.713 kb on - strand, within ECD_02443 at 2550.727 kb on - strand, within ECD_02443 at 2550.895 kb on - strand, within ECD_02443 at 2550.971 kb on - strand, within ECD_02443 at 2551.123 kb on - strand, within ECD_02443 at 2551.150 kb on - strand, within ECD_02443 at 2551.259 kb on - strand at 2551.568 kb on + strand at 2551.725 kb on - strand at 2551.732 kb on + strand at 2551.732 kb on + strand at 2551.820 kb on - strand, within ECD_02444 at 2551.922 kb on + strand, within ECD_02444 at 2552.009 kb on + strand, within ECD_02444 at 2552.016 kb on + strand, within ECD_02444 at 2552.016 kb on + strand, within ECD_02444 at 2552.016 kb on + strand, within ECD_02444 at 2552.028 kb on + strand, within ECD_02444 at 2552.028 kb on + strand, within ECD_02444 at 2552.033 kb on - strand, within ECD_02444 at 2552.054 kb on + strand, within ECD_02444 at 2552.293 kb on + strand, within ECD_02444
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,549,066 + ECD_02442 0.33 +1.5 2,549,183 - ECD_02442 0.43 -0.7 2,549,187 + ECD_02442 0.43 -0.6 2,549,188 - ECD_02442 0.44 +0.5 2,549,364 + ECD_02442 0.58 -0.7 2,549,670 + ECD_02442 0.84 -0.0 2,549,708 + ECD_02442 0.87 -0.0 2,549,708 + ECD_02442 0.87 +0.1 2,549,708 + ECD_02442 0.87 +0.2 2,549,709 - ECD_02442 0.87 -1.3 2,549,711 + ECD_02442 0.87 +0.2 2,549,794 + -0.2 2,549,794 + -0.6 2,549,826 + +0.4 2,549,832 + +0.2 2,549,833 - +0.1 2,549,964 + -0.3 2,550,067 - -0.7 2,550,417 - ECD_02443 0.29 -2.3 2,550,644 - ECD_02443 0.47 -0.8 2,550,713 - ECD_02443 0.52 -0.3 2,550,727 - ECD_02443 0.53 +0.2 2,550,895 - ECD_02443 0.67 -2.4 2,550,971 - ECD_02443 0.73 -1.2 2,551,123 - ECD_02443 0.85 -1.9 2,551,150 - ECD_02443 0.87 -1.7 2,551,259 - -1.1 2,551,568 + -0.2 2,551,725 - -0.1 2,551,732 + +0.8 2,551,732 + -0.3 2,551,820 - ECD_02444 0.15 -0.3 2,551,922 + ECD_02444 0.24 -0.3 2,552,009 + ECD_02444 0.31 -0.2 2,552,016 + ECD_02444 0.32 -0.0 2,552,016 + ECD_02444 0.32 -0.1 2,552,016 + ECD_02444 0.32 -0.4 2,552,028 + ECD_02444 0.33 -0.9 2,552,028 + ECD_02444 0.33 +0.2 2,552,033 - ECD_02444 0.33 +0.3 2,552,054 + ECD_02444 0.35 +0.4 2,552,293 + ECD_02444 0.55 -0.0
Or see this region's nucleotide sequence