Strain Fitness in Escherichia coli BL21 around ECD_02399
Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-10 |
---|---|---|---|---|---|
remove | |||||
2,494,608 | - | ECD_02397 | 0.65 | -0.2 | |
2,494,671 | + | ECD_02397 | 0.77 | -0.2 | |
2,494,740 | + | +0.7 | |||
2,494,791 | + | -0.2 | |||
2,495,042 | + | ECD_02398 | 0.44 | +0.5 | |
2,495,043 | - | ECD_02398 | 0.44 | +0.9 | |
2,495,624 | - | ECD_02399 | 0.12 | -2.9 | |
2,495,758 | - | ECD_02399 | 0.20 | +0.3 | |
2,496,063 | - | ECD_02399 | 0.40 | -0.7 | |
2,496,167 | - | ECD_02399 | 0.46 | -1.3 | |
2,496,332 | - | ECD_02399 | 0.57 | -2.5 | |
2,496,490 | - | ECD_02399 | 0.67 | -1.3 | |
2,496,490 | - | ECD_02399 | 0.67 | -0.7 | |
2,496,669 | - | ECD_02399 | 0.78 | -2.7 | |
2,496,796 | - | ECD_02399 | 0.86 | -0.0 | |
2,496,830 | - | ECD_02399 | 0.88 | -2.3 | |
2,497,050 | - | +0.0 | |||
2,497,120 | - | +0.0 | |||
2,497,207 | - | -3.0 | |||
2,497,207 | - | -1.4 | |||
2,497,228 | - | -3.8 | |||
2,497,472 | - | ECD_02400 | 0.26 | -1.1 | |
2,497,597 | - | ECD_02400 | 0.35 | +0.3 | |
2,497,636 | - | ECD_02400 | 0.38 | -1.1 | |
2,497,642 | - | ECD_02400 | 0.38 | -2.7 | |
2,497,753 | - | ECD_02400 | 0.46 | -2.1 | |
2,497,753 | - | ECD_02400 | 0.46 | -2.0 | |
2,497,781 | - | ECD_02400 | 0.48 | -0.9 |
Or see this region's nucleotide sequence