Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02394 and ECD_02395 are separated by 38 nucleotides ECD_02395 and ECD_02396 are separated by 351 nucleotides ECD_02396 and ECD_02397 are separated by 310 nucleotides
ECD_02394: ECD_02394 - exopolyphosphatase, at 2,489,595 to 2,491,136
_02394
ECD_02395: ECD_02395 - cyclic-di-GMP phosphodiesterase, anaerobic, at 2,491,175 to 2,493,418
_02395
ECD_02396: ECD_02396 - uncharacterized protein, at 2,493,770 to 2,493,961
_02396
ECD_02397: ECD_02397 - outer membrane integrity lipoprotein, at 2,494,272 to 2,494,790
_02397
Position (kb)
2491
2492
2493
2494 Strain fitness (log2 ratio)
-1
0
1 at 2490.448 kb on + strand, within ECD_02394 at 2490.720 kb on - strand, within ECD_02394 at 2490.754 kb on - strand, within ECD_02394 at 2490.907 kb on + strand, within ECD_02394 at 2490.907 kb on + strand, within ECD_02394 at 2490.908 kb on - strand, within ECD_02394 at 2490.922 kb on + strand, within ECD_02394 at 2490.925 kb on + strand, within ECD_02394 at 2491.235 kb on - strand at 2491.246 kb on - strand at 2491.255 kb on + strand at 2491.255 kb on + strand at 2491.257 kb on + strand at 2491.258 kb on - strand at 2491.258 kb on - strand at 2491.309 kb on - strand at 2491.382 kb on - strand at 2491.394 kb on - strand at 2491.394 kb on - strand at 2491.649 kb on + strand, within ECD_02395 at 2491.727 kb on - strand, within ECD_02395 at 2491.965 kb on + strand, within ECD_02395 at 2491.966 kb on - strand, within ECD_02395 at 2492.033 kb on + strand, within ECD_02395 at 2492.052 kb on + strand, within ECD_02395 at 2492.056 kb on + strand, within ECD_02395 at 2492.056 kb on + strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.284 kb on - strand, within ECD_02395 at 2492.307 kb on + strand, within ECD_02395 at 2492.308 kb on - strand, within ECD_02395 at 2492.314 kb on + strand, within ECD_02395 at 2492.347 kb on - strand, within ECD_02395 at 2492.428 kb on - strand, within ECD_02395 at 2492.488 kb on - strand, within ECD_02395 at 2492.488 kb on - strand, within ECD_02395 at 2492.508 kb on - strand, within ECD_02395 at 2492.556 kb on + strand, within ECD_02395 at 2492.569 kb on - strand, within ECD_02395 at 2492.629 kb on + strand, within ECD_02395 at 2492.629 kb on + strand, within ECD_02395 at 2492.629 kb on + strand, within ECD_02395 at 2492.630 kb on - strand, within ECD_02395 at 2492.631 kb on + strand, within ECD_02395 at 2492.684 kb on - strand, within ECD_02395 at 2492.684 kb on - strand, within ECD_02395 at 2492.751 kb on - strand, within ECD_02395 at 2492.922 kb on - strand, within ECD_02395 at 2493.045 kb on - strand, within ECD_02395 at 2493.047 kb on - strand, within ECD_02395 at 2493.047 kb on - strand, within ECD_02395 at 2493.727 kb on + strand at 2493.731 kb on + strand at 2493.753 kb on - strand at 2493.831 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,490,448 + ECD_02394 0.55 -0.2 2,490,720 - ECD_02394 0.73 +0.0 2,490,754 - ECD_02394 0.75 -0.7 2,490,907 + ECD_02394 0.85 -0.2 2,490,907 + ECD_02394 0.85 +0.6 2,490,908 - ECD_02394 0.85 -0.3 2,490,922 + ECD_02394 0.86 +0.6 2,490,925 + ECD_02394 0.86 -0.2 2,491,235 - +0.4 2,491,246 - -0.0 2,491,255 + +0.1 2,491,255 + -0.6 2,491,257 + +0.7 2,491,258 - +0.8 2,491,258 - -0.1 2,491,309 - +1.1 2,491,382 - +0.8 2,491,394 - +0.1 2,491,394 - -0.6 2,491,649 + ECD_02395 0.21 -0.2 2,491,727 - ECD_02395 0.25 +0.5 2,491,965 + ECD_02395 0.35 +0.1 2,491,966 - ECD_02395 0.35 +0.7 2,492,033 + ECD_02395 0.38 +0.3 2,492,052 + ECD_02395 0.39 -0.2 2,492,056 + ECD_02395 0.39 -0.9 2,492,056 + ECD_02395 0.39 +0.3 2,492,057 - ECD_02395 0.39 +0.1 2,492,057 - ECD_02395 0.39 +0.1 2,492,057 - ECD_02395 0.39 +0.5 2,492,057 - ECD_02395 0.39 +0.3 2,492,284 - ECD_02395 0.49 +0.3 2,492,307 + ECD_02395 0.50 -0.3 2,492,308 - ECD_02395 0.50 +1.1 2,492,314 + ECD_02395 0.51 +1.3 2,492,347 - ECD_02395 0.52 -0.9 2,492,428 - ECD_02395 0.56 +0.2 2,492,488 - ECD_02395 0.59 -0.6 2,492,488 - ECD_02395 0.59 -0.1 2,492,508 - ECD_02395 0.59 -0.2 2,492,556 + ECD_02395 0.62 +1.0 2,492,569 - ECD_02395 0.62 +0.5 2,492,629 + ECD_02395 0.65 -0.5 2,492,629 + ECD_02395 0.65 +0.4 2,492,629 + ECD_02395 0.65 -0.6 2,492,630 - ECD_02395 0.65 -0.7 2,492,631 + ECD_02395 0.65 -0.2 2,492,684 - ECD_02395 0.67 -0.0 2,492,684 - ECD_02395 0.67 -0.2 2,492,751 - ECD_02395 0.70 +0.5 2,492,922 - ECD_02395 0.78 -0.3 2,493,045 - ECD_02395 0.83 -1.1 2,493,047 - ECD_02395 0.83 +0.9 2,493,047 - ECD_02395 0.83 +0.1 2,493,727 + +0.7 2,493,731 + -0.9 2,493,753 - -0.7 2,493,831 + ECD_02396 0.32 +0.2 2,493,872 + ECD_02396 0.53 -0.3 2,493,872 + ECD_02396 0.53 -0.4 2,493,872 + ECD_02396 0.53 -0.8
Or see this region's nucleotide sequence