Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02391 and ECD_02392 overlap by 1 nucleotides ECD_02392 and ECD_02393 are separated by 170 nucleotides ECD_02393 and ECD_02394 are separated by 4 nucleotides
ECD_02391: ECD_02391 - phosphoribosylaminoimidazole synthetase, at 2,485,678 to 2,486,715
_02391
ECD_02392: ECD_02392 - phosphoribosylglycinamide formyltransferase 1, at 2,486,715 to 2,487,353
_02392
ECD_02393: ECD_02393 - polyphosphate kinase, component of RNA degradosome, at 2,487,524 to 2,489,590
_02393
ECD_02394: ECD_02394 - exopolyphosphatase, at 2,489,595 to 2,491,136
_02394
Position (kb)
2487
2488
2489
2490 Strain fitness (log2 ratio)
-2
-1
0
1 at 2486.593 kb on - strand, within ECD_02391 at 2486.720 kb on + strand at 2486.765 kb on + strand at 2486.822 kb on + strand, within ECD_02392 at 2486.913 kb on + strand, within ECD_02392 at 2486.946 kb on + strand, within ECD_02392 at 2486.946 kb on + strand, within ECD_02392 at 2486.947 kb on - strand, within ECD_02392 at 2486.979 kb on - strand, within ECD_02392 at 2487.239 kb on + strand, within ECD_02392 at 2487.244 kb on - strand, within ECD_02392 at 2487.244 kb on - strand, within ECD_02392 at 2487.336 kb on + strand at 2487.351 kb on + strand at 2487.503 kb on + strand at 2487.542 kb on + strand at 2487.648 kb on - strand at 2487.983 kb on + strand, within ECD_02393 at 2487.983 kb on + strand, within ECD_02393 at 2487.990 kb on - strand, within ECD_02393 at 2488.227 kb on + strand, within ECD_02393 at 2488.554 kb on - strand, within ECD_02393 at 2489.066 kb on + strand, within ECD_02393 at 2489.171 kb on + strand, within ECD_02393 at 2489.451 kb on + strand at 2489.480 kb on + strand at 2489.481 kb on - strand at 2489.603 kb on - strand at 2489.609 kb on + strand at 2489.674 kb on + strand at 2489.757 kb on - strand, within ECD_02394 at 2489.757 kb on - strand, within ECD_02394 at 2489.852 kb on - strand, within ECD_02394 at 2490.448 kb on + strand, within ECD_02394
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,486,593 - ECD_02391 0.88 -2.3 2,486,720 + +0.6 2,486,765 + +0.1 2,486,822 + ECD_02392 0.17 +1.4 2,486,913 + ECD_02392 0.31 -0.1 2,486,946 + ECD_02392 0.36 -0.2 2,486,946 + ECD_02392 0.36 +0.0 2,486,947 - ECD_02392 0.36 -0.6 2,486,979 - ECD_02392 0.41 +0.2 2,487,239 + ECD_02392 0.82 -0.2 2,487,244 - ECD_02392 0.83 +0.1 2,487,244 - ECD_02392 0.83 +0.4 2,487,336 + -0.5 2,487,351 + -0.2 2,487,503 + +0.6 2,487,542 + -1.5 2,487,648 - +1.2 2,487,983 + ECD_02393 0.22 -1.3 2,487,983 + ECD_02393 0.22 -0.6 2,487,990 - ECD_02393 0.23 -0.3 2,488,227 + ECD_02393 0.34 -1.5 2,488,554 - ECD_02393 0.50 -1.5 2,489,066 + ECD_02393 0.75 -0.9 2,489,171 + ECD_02393 0.80 -1.0 2,489,451 + -0.5 2,489,480 + -1.5 2,489,481 - -1.4 2,489,603 - -1.1 2,489,609 + -1.3 2,489,674 + -0.8 2,489,757 - ECD_02394 0.11 -0.1 2,489,757 - ECD_02394 0.11 -1.1 2,489,852 - ECD_02394 0.17 -0.5 2,490,448 + ECD_02394 0.55 -0.2
Or see this region's nucleotide sequence