Strain Fitness in Escherichia coli BL21 around ECD_02392
Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-10 |
---|---|---|---|---|---|
remove | |||||
2,485,764 | - | -0.5 | |||
2,486,122 | + | ECD_02391 | 0.43 | -0.5 | |
2,486,122 | + | ECD_02391 | 0.43 | -0.4 | |
2,486,122 | + | ECD_02391 | 0.43 | -1.5 | |
2,486,122 | + | ECD_02391 | 0.43 | -1.8 | |
2,486,123 | - | ECD_02391 | 0.43 | -0.8 | |
2,486,467 | - | ECD_02391 | 0.76 | -0.8 | |
2,486,593 | - | ECD_02391 | 0.88 | -2.3 | |
2,486,720 | + | +0.6 | |||
2,486,765 | + | +0.1 | |||
2,486,822 | + | ECD_02392 | 0.17 | +1.4 | |
2,486,913 | + | ECD_02392 | 0.31 | -0.1 | |
2,486,946 | + | ECD_02392 | 0.36 | -0.2 | |
2,486,946 | + | ECD_02392 | 0.36 | +0.0 | |
2,486,947 | - | ECD_02392 | 0.36 | -0.6 | |
2,486,979 | - | ECD_02392 | 0.41 | +0.2 | |
2,487,239 | + | ECD_02392 | 0.82 | -0.2 | |
2,487,244 | - | ECD_02392 | 0.83 | +0.1 | |
2,487,244 | - | ECD_02392 | 0.83 | +0.4 | |
2,487,336 | + | -0.5 | |||
2,487,351 | + | -0.2 | |||
2,487,503 | + | +0.6 | |||
2,487,542 | + | -1.5 | |||
2,487,648 | - | +1.2 | |||
2,487,983 | + | ECD_02393 | 0.22 | -1.3 | |
2,487,983 | + | ECD_02393 | 0.22 | -0.6 | |
2,487,990 | - | ECD_02393 | 0.23 | -0.3 | |
2,488,227 | + | ECD_02393 | 0.34 | -1.5 |
Or see this region's nucleotide sequence