Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02390 and ECD_02391 are separated by 324 nucleotides ECD_02391 and ECD_02392 overlap by 1 nucleotides ECD_02392 and ECD_02393 are separated by 170 nucleotides
ECD_02390: ECD_02390 - uracil phosphoribosyltransferase, at 2,484,727 to 2,485,353
_02390
ECD_02391: ECD_02391 - phosphoribosylaminoimidazole synthetase, at 2,485,678 to 2,486,715
_02391
ECD_02392: ECD_02392 - phosphoribosylglycinamide formyltransferase 1, at 2,486,715 to 2,487,353
_02392
ECD_02393: ECD_02393 - polyphosphate kinase, component of RNA degradosome, at 2,487,524 to 2,489,590
_02393
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-2
-1
0
1 at 2484.712 kb on - strand at 2484.819 kb on - strand, within ECD_02390 at 2484.859 kb on - strand, within ECD_02390 at 2484.875 kb on - strand, within ECD_02390 at 2484.875 kb on - strand, within ECD_02390 at 2484.997 kb on - strand, within ECD_02390 at 2484.997 kb on - strand, within ECD_02390 at 2485.016 kb on + strand, within ECD_02390 at 2485.017 kb on - strand, within ECD_02390 at 2485.017 kb on - strand, within ECD_02390 at 2485.050 kb on - strand, within ECD_02390 at 2485.050 kb on - strand, within ECD_02390 at 2485.050 kb on - strand, within ECD_02390 at 2485.054 kb on - strand, within ECD_02390 at 2485.108 kb on - strand, within ECD_02390 at 2485.108 kb on - strand, within ECD_02390 at 2485.233 kb on - strand, within ECD_02390 at 2485.233 kb on - strand, within ECD_02390 at 2485.233 kb on - strand, within ECD_02390 at 2485.657 kb on + strand at 2485.698 kb on + strand at 2485.703 kb on - strand at 2485.764 kb on - strand at 2486.122 kb on + strand, within ECD_02391 at 2486.122 kb on + strand, within ECD_02391 at 2486.122 kb on + strand, within ECD_02391 at 2486.122 kb on + strand, within ECD_02391 at 2486.123 kb on - strand, within ECD_02391 at 2486.467 kb on - strand, within ECD_02391 at 2486.593 kb on - strand, within ECD_02391 at 2486.720 kb on + strand at 2486.765 kb on + strand at 2486.822 kb on + strand, within ECD_02392 at 2486.913 kb on + strand, within ECD_02392 at 2486.946 kb on + strand, within ECD_02392 at 2486.946 kb on + strand, within ECD_02392 at 2486.947 kb on - strand, within ECD_02392 at 2486.979 kb on - strand, within ECD_02392 at 2487.239 kb on + strand, within ECD_02392 at 2487.244 kb on - strand, within ECD_02392 at 2487.244 kb on - strand, within ECD_02392 at 2487.336 kb on + strand at 2487.351 kb on + strand at 2487.503 kb on + strand at 2487.542 kb on + strand at 2487.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,484,712 - +0.5 2,484,819 - ECD_02390 0.15 +0.3 2,484,859 - ECD_02390 0.21 +0.4 2,484,875 - ECD_02390 0.24 +0.5 2,484,875 - ECD_02390 0.24 -0.5 2,484,997 - ECD_02390 0.43 -0.3 2,484,997 - ECD_02390 0.43 +0.0 2,485,016 + ECD_02390 0.46 -0.5 2,485,017 - ECD_02390 0.46 -0.2 2,485,017 - ECD_02390 0.46 +0.7 2,485,050 - ECD_02390 0.52 +0.1 2,485,050 - ECD_02390 0.52 -0.8 2,485,050 - ECD_02390 0.52 +0.3 2,485,054 - ECD_02390 0.52 +0.1 2,485,108 - ECD_02390 0.61 -0.1 2,485,108 - ECD_02390 0.61 +0.6 2,485,233 - ECD_02390 0.81 -0.3 2,485,233 - ECD_02390 0.81 +0.9 2,485,233 - ECD_02390 0.81 -0.1 2,485,657 + +0.2 2,485,698 + -1.1 2,485,703 - -1.0 2,485,764 - -0.5 2,486,122 + ECD_02391 0.43 -0.5 2,486,122 + ECD_02391 0.43 -0.4 2,486,122 + ECD_02391 0.43 -1.5 2,486,122 + ECD_02391 0.43 -1.8 2,486,123 - ECD_02391 0.43 -0.8 2,486,467 - ECD_02391 0.76 -0.8 2,486,593 - ECD_02391 0.88 -2.3 2,486,720 + +0.6 2,486,765 + +0.1 2,486,822 + ECD_02392 0.17 +1.4 2,486,913 + ECD_02392 0.31 -0.1 2,486,946 + ECD_02392 0.36 -0.2 2,486,946 + ECD_02392 0.36 +0.0 2,486,947 - ECD_02392 0.36 -0.6 2,486,979 - ECD_02392 0.41 +0.2 2,487,239 + ECD_02392 0.82 -0.2 2,487,244 - ECD_02392 0.83 +0.1 2,487,244 - ECD_02392 0.83 +0.4 2,487,336 + -0.5 2,487,351 + -0.2 2,487,503 + +0.6 2,487,542 + -1.5 2,487,648 - +1.2
Or see this region's nucleotide sequence