Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02376 and ECD_02377 are separated by 14 nucleotides ECD_02377 and ECD_02378 are separated by 4 nucleotides
ECD_02376: ECD_02376 - hydrogenase 4, membrane subunit, at 2,469,385 to 2,470,734
_02376
ECD_02377: ECD_02377 - hydrogenase 4, membrane subunit, at 2,470,749 to 2,471,399
_02377
ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984
_02378
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-1
0
1 at 2469.794 kb on + strand, within ECD_02376 at 2469.807 kb on + strand, within ECD_02376 at 2469.808 kb on - strand, within ECD_02376 at 2469.835 kb on + strand, within ECD_02376 at 2469.969 kb on - strand, within ECD_02376 at 2470.060 kb on + strand, within ECD_02376 at 2470.165 kb on + strand, within ECD_02376 at 2470.165 kb on + strand, within ECD_02376 at 2470.166 kb on - strand, within ECD_02376 at 2470.166 kb on - strand, within ECD_02376 at 2470.334 kb on + strand, within ECD_02376 at 2470.352 kb on - strand, within ECD_02376 at 2470.392 kb on - strand, within ECD_02376 at 2470.713 kb on - strand at 2470.733 kb on - strand at 2470.735 kb on + strand at 2470.735 kb on + strand at 2470.760 kb on + strand at 2470.761 kb on - strand at 2471.144 kb on - strand, within ECD_02377 at 2471.284 kb on + strand, within ECD_02377 at 2471.284 kb on + strand, within ECD_02377 at 2471.352 kb on - strand at 2471.513 kb on + strand at 2471.514 kb on - strand at 2471.516 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.520 kb on + strand at 2471.521 kb on - strand at 2471.521 kb on - strand at 2471.521 kb on - strand at 2471.680 kb on + strand, within ECD_02378 at 2471.793 kb on + strand, within ECD_02378 at 2471.802 kb on + strand, within ECD_02378 at 2471.870 kb on - strand, within ECD_02378 at 2471.905 kb on + strand, within ECD_02378 at 2471.905 kb on + strand, within ECD_02378 at 2471.913 kb on + strand, within ECD_02378 at 2471.914 kb on - strand, within ECD_02378 at 2472.053 kb on + strand, within ECD_02378 at 2472.053 kb on + strand, within ECD_02378 at 2472.220 kb on + strand, within ECD_02378 at 2472.220 kb on + strand, within ECD_02378 at 2472.221 kb on - strand, within ECD_02378 at 2472.229 kb on - strand, within ECD_02378 at 2472.229 kb on - strand, within ECD_02378 at 2472.320 kb on + strand, within ECD_02378 at 2472.333 kb on + strand, within ECD_02378 at 2472.389 kb on + strand, within ECD_02378 at 2472.390 kb on - strand, within ECD_02378
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,469,794 + ECD_02376 0.30 +0.7 2,469,807 + ECD_02376 0.31 +0.5 2,469,808 - ECD_02376 0.31 +0.1 2,469,835 + ECD_02376 0.33 -0.1 2,469,969 - ECD_02376 0.43 -0.4 2,470,060 + ECD_02376 0.50 +0.3 2,470,165 + ECD_02376 0.58 +0.0 2,470,165 + ECD_02376 0.58 -0.1 2,470,166 - ECD_02376 0.58 +0.2 2,470,166 - ECD_02376 0.58 +0.6 2,470,334 + ECD_02376 0.70 -0.5 2,470,352 - ECD_02376 0.72 +0.7 2,470,392 - ECD_02376 0.75 -0.3 2,470,713 - -0.3 2,470,733 - -0.2 2,470,735 + +0.7 2,470,735 + +1.7 2,470,760 + +0.3 2,470,761 - -0.1 2,471,144 - ECD_02377 0.61 -0.1 2,471,284 + ECD_02377 0.82 +0.3 2,471,284 + ECD_02377 0.82 -0.0 2,471,352 - -0.7 2,471,513 + +0.1 2,471,514 - +0.2 2,471,516 + -0.2 2,471,520 + +0.2 2,471,520 + +0.0 2,471,520 + +0.2 2,471,520 + -0.3 2,471,520 + -0.5 2,471,521 - +0.4 2,471,521 - -0.5 2,471,521 - +0.6 2,471,680 + ECD_02378 0.17 +0.7 2,471,793 + ECD_02378 0.25 -0.2 2,471,802 + ECD_02378 0.25 -0.4 2,471,870 - ECD_02378 0.29 -0.6 2,471,905 + ECD_02378 0.32 +0.2 2,471,905 + ECD_02378 0.32 +0.2 2,471,913 + ECD_02378 0.32 +0.4 2,471,914 - ECD_02378 0.32 +0.3 2,472,053 + ECD_02378 0.41 +0.5 2,472,053 + ECD_02378 0.41 -0.0 2,472,220 + ECD_02378 0.52 -0.3 2,472,220 + ECD_02378 0.52 +0.1 2,472,221 - ECD_02378 0.52 +0.9 2,472,229 - ECD_02378 0.52 +0.5 2,472,229 - ECD_02378 0.52 +0.1 2,472,320 + ECD_02378 0.58 +0.6 2,472,333 + ECD_02378 0.59 +0.0 2,472,389 + ECD_02378 0.62 +0.0 2,472,390 - ECD_02378 0.62 +0.2
Or see this region's nucleotide sequence