Strain Fitness in Escherichia coli BL21 around ECD_02334

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02332 and ECD_02333 are separated by 206 nucleotidesECD_02333 and ECD_02334 overlap by 14 nucleotidesECD_02334 and ECD_02335 are separated by 213 nucleotides ECD_02332: ECD_02332 - RpoE-regulated lipoprotein, at 2,421,675 to 2,422,250 _02332 ECD_02333: ECD_02333 - inner membrane protein, at 2,422,457 to 2,422,906 _02333 ECD_02334: ECD_02334 - GNAT family putative N-acetyltransferase, at 2,422,893 to 2,423,318 _02334 ECD_02335: ECD_02335 - N-acetylmuramoyl-l-alanine amidase I, at 2,423,532 to 2,424,401 _02335 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -1 0 1at 2422.179 kb on - strand, within ECD_02332at 2422.179 kb on - strand, within ECD_02332at 2422.228 kb on - strandat 2422.228 kb on - strandat 2422.274 kb on - strandat 2422.382 kb on - strandat 2422.632 kb on + strand, within ECD_02333at 2422.638 kb on - strand, within ECD_02333at 2422.638 kb on - strand, within ECD_02333at 2422.826 kb on + strand, within ECD_02333at 2422.827 kb on - strand, within ECD_02333at 2422.966 kb on + strand, within ECD_02334at 2423.107 kb on + strand, within ECD_02334at 2423.108 kb on - strand, within ECD_02334at 2423.108 kb on - strand, within ECD_02334at 2423.108 kb on - strand, within ECD_02334at 2423.210 kb on + strand, within ECD_02334at 2423.211 kb on - strand, within ECD_02334at 2423.311 kb on - strandat 2423.322 kb on - strandat 2423.496 kb on + strandat 2423.518 kb on - strandat 2423.552 kb on - strandat 2423.897 kb on + strand, within ECD_02335at 2423.999 kb on + strand, within ECD_02335at 2424.015 kb on + strand, within ECD_02335at 2424.015 kb on + strand, within ECD_02335at 2424.015 kb on + strand, within ECD_02335at 2424.126 kb on - strand, within ECD_02335at 2424.296 kb on - strand, within ECD_02335

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,422,179 - ECD_02332 0.88 +0.4
2,422,179 - ECD_02332 0.88 +0.8
2,422,228 - -0.0
2,422,228 - +0.4
2,422,274 - +0.4
2,422,382 - +0.3
2,422,632 + ECD_02333 0.39 +0.1
2,422,638 - ECD_02333 0.40 -1.0
2,422,638 - ECD_02333 0.40 -0.1
2,422,826 + ECD_02333 0.82 -0.4
2,422,827 - ECD_02333 0.82 +1.0
2,422,966 + ECD_02334 0.17 -0.2
2,423,107 + ECD_02334 0.50 -0.5
2,423,108 - ECD_02334 0.50 -0.5
2,423,108 - ECD_02334 0.50 -0.3
2,423,108 - ECD_02334 0.50 +0.5
2,423,210 + ECD_02334 0.74 -1.2
2,423,211 - ECD_02334 0.75 -0.4
2,423,311 - +0.6
2,423,322 - +0.2
2,423,496 + -0.2
2,423,518 - +0.9
2,423,552 - +0.5
2,423,897 + ECD_02335 0.42 +0.1
2,423,999 + ECD_02335 0.54 -0.9
2,424,015 + ECD_02335 0.56 +0.6
2,424,015 + ECD_02335 0.56 -0.3
2,424,015 + ECD_02335 0.56 -0.0
2,424,126 - ECD_02335 0.68 +0.5
2,424,296 - ECD_02335 0.88 -0.2

Or see this region's nucleotide sequence