Strain Fitness in Escherichia coli BL21 around ECD_02314

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02313 and ECD_02314 are separated by 184 nucleotidesECD_02314 and ECD_02315 are separated by 383 nucleotidesECD_02315 and ECD_02316 are separated by 44 nucleotides ECD_02313: ECD_02313 - sulfate transporter, sulfite inhibited, at 2,403,850 to 2,404,611 _02313 ECD_02314: ECD_02314 - cysteine synthase A, O-acetylserine sulfhydrolase A subunit, at 2,404,796 to 2,405,767 _02314 ECD_02315: ECD_02315 - phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr), at 2,406,151 to 2,406,408 _02315 ECD_02316: ECD_02316 - PEP-protein phosphotransferase of PTS system (enzyme I), at 2,406,453 to 2,408,180 _02316 Position (kb) 2404 2405 2406Strain fitness (log2 ratio) -2 -1 0 1at 2403.892 kb on + strandat 2404.055 kb on + strand, within ECD_02313at 2404.055 kb on + strand, within ECD_02313at 2404.055 kb on + strand, within ECD_02313at 2404.118 kb on - strand, within ECD_02313at 2404.137 kb on + strand, within ECD_02313at 2404.166 kb on + strand, within ECD_02313at 2404.304 kb on + strand, within ECD_02313at 2404.304 kb on + strand, within ECD_02313at 2404.371 kb on + strand, within ECD_02313at 2404.396 kb on + strand, within ECD_02313at 2404.405 kb on + strand, within ECD_02313at 2404.476 kb on + strand, within ECD_02313at 2404.525 kb on - strand, within ECD_02313at 2404.537 kb on - strandat 2404.709 kb on + strandat 2404.710 kb on - strandat 2404.710 kb on - strandat 2404.710 kb on - strandat 2404.710 kb on - strandat 2404.710 kb on - strandat 2404.718 kb on + strandat 2404.719 kb on - strandat 2404.719 kb on - strandat 2404.726 kb on + strandat 2404.778 kb on + strandat 2404.784 kb on + strandat 2404.801 kb on + strandat 2405.030 kb on + strand, within ECD_02314at 2405.030 kb on + strand, within ECD_02314at 2405.031 kb on - strand, within ECD_02314at 2405.034 kb on + strand, within ECD_02314at 2405.034 kb on + strand, within ECD_02314at 2405.034 kb on + strand, within ECD_02314at 2405.086 kb on + strand, within ECD_02314at 2405.087 kb on - strand, within ECD_02314at 2405.389 kb on + strand, within ECD_02314at 2405.389 kb on + strand, within ECD_02314at 2405.389 kb on + strand, within ECD_02314at 2405.391 kb on + strand, within ECD_02314at 2405.391 kb on + strand, within ECD_02314at 2405.455 kb on + strand, within ECD_02314at 2405.596 kb on + strand, within ECD_02314at 2405.608 kb on + strand, within ECD_02314at 2405.609 kb on - strand, within ECD_02314at 2405.715 kb on + strandat 2405.887 kb on + strandat 2406.032 kb on + strandat 2406.079 kb on + strandat 2406.112 kb on + strandat 2406.126 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,403,892 + -0.1
2,404,055 + ECD_02313 0.27 -0.0
2,404,055 + ECD_02313 0.27 -0.7
2,404,055 + ECD_02313 0.27 -0.1
2,404,118 - ECD_02313 0.35 +0.0
2,404,137 + ECD_02313 0.38 -0.0
2,404,166 + ECD_02313 0.41 +0.6
2,404,304 + ECD_02313 0.60 +0.1
2,404,304 + ECD_02313 0.60 -0.2
2,404,371 + ECD_02313 0.68 +0.1
2,404,396 + ECD_02313 0.72 +0.0
2,404,405 + ECD_02313 0.73 -0.4
2,404,476 + ECD_02313 0.82 +0.4
2,404,525 - ECD_02313 0.89 -0.4
2,404,537 - -0.6
2,404,709 + -0.0
2,404,710 - -0.8
2,404,710 - -0.2
2,404,710 - -0.2
2,404,710 - +0.3
2,404,710 - +1.2
2,404,718 + +0.9
2,404,719 - +0.3
2,404,719 - -0.1
2,404,726 + +0.1
2,404,778 + +0.1
2,404,784 + -0.0
2,404,801 + -0.4
2,405,030 + ECD_02314 0.24 -1.6
2,405,030 + ECD_02314 0.24 -0.7
2,405,031 - ECD_02314 0.24 -0.9
2,405,034 + ECD_02314 0.24 -0.9
2,405,034 + ECD_02314 0.24 -0.8
2,405,034 + ECD_02314 0.24 +0.2
2,405,086 + ECD_02314 0.30 -0.4
2,405,087 - ECD_02314 0.30 -0.6
2,405,389 + ECD_02314 0.61 -0.2
2,405,389 + ECD_02314 0.61 -0.4
2,405,389 + ECD_02314 0.61 -1.0
2,405,391 + ECD_02314 0.61 -0.3
2,405,391 + ECD_02314 0.61 -0.6
2,405,455 + ECD_02314 0.68 -0.2
2,405,596 + ECD_02314 0.82 -0.5
2,405,608 + ECD_02314 0.84 -1.0
2,405,609 - ECD_02314 0.84 -2.2
2,405,715 + -0.2
2,405,887 + +0.9
2,406,032 + -0.0
2,406,079 + -0.2
2,406,112 + +0.3
2,406,126 + -0.8

Or see this region's nucleotide sequence