Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02244 and ECD_02245 are separated by 65 nucleotides ECD_02245 and ECD_02246 are separated by 98 nucleotides
ECD_02244: ECD_02244 - putative semialdehyde dehydrogenase, at 2,322,889 to 2,323,902
_02244
ECD_02245: ECD_02245 - erythronate-4-phosphate dehydrogenase, at 2,323,968 to 2,325,104
_02245
ECD_02246: ECD_02246 - putative flagella assembly protein, at 2,325,203 to 2,326,198
_02246
Position (kb)
2323
2324
2325
2326 Strain fitness (log2 ratio)
-2
-1
0
1 at 2323.055 kb on - strand, within ECD_02244 at 2323.093 kb on - strand, within ECD_02244 at 2323.179 kb on - strand, within ECD_02244 at 2323.184 kb on - strand, within ECD_02244 at 2323.279 kb on - strand, within ECD_02244 at 2323.279 kb on - strand, within ECD_02244 at 2323.447 kb on - strand, within ECD_02244 at 2323.565 kb on - strand, within ECD_02244 at 2323.970 kb on - strand at 2324.007 kb on - strand at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.273 kb on + strand, within ECD_02245 at 2324.283 kb on - strand, within ECD_02245 at 2324.425 kb on - strand, within ECD_02245 at 2324.761 kb on + strand, within ECD_02245 at 2324.762 kb on - strand, within ECD_02245 at 2324.813 kb on - strand, within ECD_02245 at 2324.835 kb on - strand, within ECD_02245 at 2324.927 kb on + strand, within ECD_02245 at 2325.061 kb on - strand at 2325.061 kb on - strand at 2325.081 kb on - strand at 2325.119 kb on + strand at 2325.171 kb on - strand at 2325.191 kb on + strand at 2325.192 kb on - strand at 2325.197 kb on + strand at 2325.197 kb on + strand at 2325.197 kb on + strand at 2325.198 kb on - strand at 2325.207 kb on + strand at 2325.304 kb on + strand, within ECD_02246 at 2325.446 kb on - strand, within ECD_02246 at 2325.519 kb on - strand, within ECD_02246 at 2325.557 kb on + strand, within ECD_02246 at 2325.612 kb on + strand, within ECD_02246 at 2325.873 kb on + strand, within ECD_02246 at 2325.931 kb on - strand, within ECD_02246 at 2325.963 kb on - strand, within ECD_02246 at 2325.963 kb on - strand, within ECD_02246 at 2325.965 kb on - strand, within ECD_02246 at 2325.965 kb on - strand, within ECD_02246 at 2326.040 kb on + strand, within ECD_02246 at 2326.091 kb on - strand, within ECD_02246
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,323,055 - ECD_02244 0.16 +0.1 2,323,093 - ECD_02244 0.20 -0.6 2,323,179 - ECD_02244 0.29 -0.0 2,323,184 - ECD_02244 0.29 +0.2 2,323,279 - ECD_02244 0.38 -0.3 2,323,279 - ECD_02244 0.38 -0.5 2,323,447 - ECD_02244 0.55 -0.0 2,323,565 - ECD_02244 0.67 -0.2 2,323,970 - +0.6 2,324,007 - -0.8 2,324,155 + ECD_02245 0.16 -1.0 2,324,155 + ECD_02245 0.16 -0.9 2,324,155 + ECD_02245 0.16 -2.0 2,324,155 + ECD_02245 0.16 +0.3 2,324,273 + ECD_02245 0.27 -0.1 2,324,283 - ECD_02245 0.28 -0.7 2,324,425 - ECD_02245 0.40 -0.5 2,324,761 + ECD_02245 0.70 -0.8 2,324,762 - ECD_02245 0.70 -0.9 2,324,813 - ECD_02245 0.74 -0.0 2,324,835 - ECD_02245 0.76 -0.6 2,324,927 + ECD_02245 0.84 -1.4 2,325,061 - -2.0 2,325,061 - -1.2 2,325,081 - -0.1 2,325,119 + -1.2 2,325,171 - -0.6 2,325,191 + -0.2 2,325,192 - -0.1 2,325,197 + -1.1 2,325,197 + +0.0 2,325,197 + +1.4 2,325,198 - +0.3 2,325,207 + +0.4 2,325,304 + ECD_02246 0.10 +0.8 2,325,446 - ECD_02246 0.24 -0.5 2,325,519 - ECD_02246 0.32 -0.3 2,325,557 + ECD_02246 0.36 -0.1 2,325,612 + ECD_02246 0.41 -0.0 2,325,873 + ECD_02246 0.67 +0.7 2,325,931 - ECD_02246 0.73 +1.0 2,325,963 - ECD_02246 0.76 +0.2 2,325,963 - ECD_02246 0.76 -0.2 2,325,965 - ECD_02246 0.77 -0.1 2,325,965 - ECD_02246 0.77 +0.2 2,326,040 + ECD_02246 0.84 -0.9 2,326,091 - ECD_02246 0.89 +0.2
Or see this region's nucleotide sequence