Strain Fitness in Escherichia coli BL21 around ECD_02245

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02244 and ECD_02245 are separated by 65 nucleotidesECD_02245 and ECD_02246 are separated by 98 nucleotides ECD_02244: ECD_02244 - putative semialdehyde dehydrogenase, at 2,322,889 to 2,323,902 _02244 ECD_02245: ECD_02245 - erythronate-4-phosphate dehydrogenase, at 2,323,968 to 2,325,104 _02245 ECD_02246: ECD_02246 - putative flagella assembly protein, at 2,325,203 to 2,326,198 _02246 Position (kb) 2323 2324 2325 2326Strain fitness (log2 ratio) -2 -1 0 1at 2323.055 kb on - strand, within ECD_02244at 2323.093 kb on - strand, within ECD_02244at 2323.179 kb on - strand, within ECD_02244at 2323.184 kb on - strand, within ECD_02244at 2323.279 kb on - strand, within ECD_02244at 2323.279 kb on - strand, within ECD_02244at 2323.447 kb on - strand, within ECD_02244at 2323.565 kb on - strand, within ECD_02244at 2323.970 kb on - strandat 2324.007 kb on - strandat 2324.155 kb on + strand, within ECD_02245at 2324.155 kb on + strand, within ECD_02245at 2324.155 kb on + strand, within ECD_02245at 2324.155 kb on + strand, within ECD_02245at 2324.273 kb on + strand, within ECD_02245at 2324.283 kb on - strand, within ECD_02245at 2324.425 kb on - strand, within ECD_02245at 2324.761 kb on + strand, within ECD_02245at 2324.762 kb on - strand, within ECD_02245at 2324.813 kb on - strand, within ECD_02245at 2324.835 kb on - strand, within ECD_02245at 2324.927 kb on + strand, within ECD_02245at 2325.061 kb on - strandat 2325.061 kb on - strandat 2325.081 kb on - strandat 2325.119 kb on + strandat 2325.171 kb on - strandat 2325.191 kb on + strandat 2325.192 kb on - strandat 2325.197 kb on + strandat 2325.197 kb on + strandat 2325.197 kb on + strandat 2325.198 kb on - strandat 2325.207 kb on + strandat 2325.304 kb on + strand, within ECD_02246at 2325.446 kb on - strand, within ECD_02246at 2325.519 kb on - strand, within ECD_02246at 2325.557 kb on + strand, within ECD_02246at 2325.612 kb on + strand, within ECD_02246at 2325.873 kb on + strand, within ECD_02246at 2325.931 kb on - strand, within ECD_02246at 2325.963 kb on - strand, within ECD_02246at 2325.963 kb on - strand, within ECD_02246at 2325.965 kb on - strand, within ECD_02246at 2325.965 kb on - strand, within ECD_02246at 2326.040 kb on + strand, within ECD_02246at 2326.091 kb on - strand, within ECD_02246

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,323,055 - ECD_02244 0.16 +0.1
2,323,093 - ECD_02244 0.20 -0.6
2,323,179 - ECD_02244 0.29 -0.0
2,323,184 - ECD_02244 0.29 +0.2
2,323,279 - ECD_02244 0.38 -0.3
2,323,279 - ECD_02244 0.38 -0.5
2,323,447 - ECD_02244 0.55 -0.0
2,323,565 - ECD_02244 0.67 -0.2
2,323,970 - +0.6
2,324,007 - -0.8
2,324,155 + ECD_02245 0.16 -1.0
2,324,155 + ECD_02245 0.16 -0.9
2,324,155 + ECD_02245 0.16 -2.0
2,324,155 + ECD_02245 0.16 +0.3
2,324,273 + ECD_02245 0.27 -0.1
2,324,283 - ECD_02245 0.28 -0.7
2,324,425 - ECD_02245 0.40 -0.5
2,324,761 + ECD_02245 0.70 -0.8
2,324,762 - ECD_02245 0.70 -0.9
2,324,813 - ECD_02245 0.74 -0.0
2,324,835 - ECD_02245 0.76 -0.6
2,324,927 + ECD_02245 0.84 -1.4
2,325,061 - -2.0
2,325,061 - -1.2
2,325,081 - -0.1
2,325,119 + -1.2
2,325,171 - -0.6
2,325,191 + -0.2
2,325,192 - -0.1
2,325,197 + -1.1
2,325,197 + +0.0
2,325,197 + +1.4
2,325,198 - +0.3
2,325,207 + +0.4
2,325,304 + ECD_02246 0.10 +0.8
2,325,446 - ECD_02246 0.24 -0.5
2,325,519 - ECD_02246 0.32 -0.3
2,325,557 + ECD_02246 0.36 -0.1
2,325,612 + ECD_02246 0.41 -0.0
2,325,873 + ECD_02246 0.67 +0.7
2,325,931 - ECD_02246 0.73 +1.0
2,325,963 - ECD_02246 0.76 +0.2
2,325,963 - ECD_02246 0.76 -0.2
2,325,965 - ECD_02246 0.77 -0.1
2,325,965 - ECD_02246 0.77 +0.2
2,326,040 + ECD_02246 0.84 -0.9
2,326,091 - ECD_02246 0.89 +0.2

Or see this region's nucleotide sequence