Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02234 and ECD_02235 are separated by 220 nucleotides ECD_02235 and ECD_02236 are separated by 265 nucleotides ECD_02236 and ECD_02237 are separated by 94 nucleotides
ECD_02234: ECD_02234 - histidine ABC transporter periplasmic binding protein, at 2,313,259 to 2,314,041
_02234
ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044
_02235
ECD_02236: ECD_02236 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,315,310 to 2,315,879
_02236
ECD_02237: ECD_02237 - amidophosphoribosyltransferase, at 2,315,974 to 2,317,491
_02237
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1 at 2313.270 kb on - strand at 2313.309 kb on - strand at 2313.309 kb on - strand at 2313.375 kb on + strand, within ECD_02234 at 2313.514 kb on - strand, within ECD_02234 at 2313.714 kb on - strand, within ECD_02234 at 2313.714 kb on - strand, within ECD_02234 at 2313.840 kb on + strand, within ECD_02234 at 2313.841 kb on - strand, within ECD_02234 at 2313.841 kb on - strand, within ECD_02234 at 2314.260 kb on + strand at 2314.379 kb on - strand, within ECD_02235 at 2314.411 kb on - strand, within ECD_02235 at 2314.502 kb on + strand, within ECD_02235 at 2314.503 kb on - strand, within ECD_02235 at 2314.540 kb on - strand, within ECD_02235 at 2314.561 kb on - strand, within ECD_02235 at 2314.606 kb on - strand, within ECD_02235 at 2314.844 kb on - strand, within ECD_02235 at 2314.912 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.962 kb on - strand, within ECD_02235 at 2314.984 kb on - strand at 2315.049 kb on - strand at 2315.049 kb on - strand at 2315.083 kb on + strand at 2315.122 kb on + strand at 2315.312 kb on - strand at 2315.880 kb on - strand at 2315.884 kb on - strand at 2316.042 kb on + strand at 2316.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,313,270 - -0.2 2,313,309 - +0.0 2,313,309 - -0.6 2,313,375 + ECD_02234 0.15 +0.1 2,313,514 - ECD_02234 0.33 +0.0 2,313,714 - ECD_02234 0.58 +0.1 2,313,714 - ECD_02234 0.58 -0.8 2,313,840 + ECD_02234 0.74 +0.8 2,313,841 - ECD_02234 0.74 +0.2 2,313,841 - ECD_02234 0.74 +0.5 2,314,260 + -0.4 2,314,379 - ECD_02235 0.15 -0.7 2,314,411 - ECD_02235 0.19 -0.4 2,314,502 + ECD_02235 0.31 +1.0 2,314,503 - ECD_02235 0.31 -0.3 2,314,540 - ECD_02235 0.36 -0.1 2,314,561 - ECD_02235 0.38 +0.1 2,314,606 - ECD_02235 0.44 +0.7 2,314,844 - ECD_02235 0.74 +0.2 2,314,912 + ECD_02235 0.83 +0.1 2,314,938 + ECD_02235 0.86 +0.9 2,314,938 + ECD_02235 0.86 +0.0 2,314,938 + ECD_02235 0.86 +0.1 2,314,958 - ECD_02235 0.89 +0.1 2,314,958 - ECD_02235 0.89 +0.3 2,314,962 - ECD_02235 0.89 -0.3 2,314,984 - +1.0 2,315,049 - +0.7 2,315,049 - +0.4 2,315,083 + -0.2 2,315,122 + +0.2 2,315,312 - +1.1 2,315,880 - +0.2 2,315,884 - +0.3 2,316,042 + -1.9 2,316,043 - -0.8
Or see this region's nucleotide sequence