Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02213 and ECD_02214 are separated by 630 nucleotides ECD_02214 and ECD_02215 are separated by 919 nucleotides
ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324
_02213
ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893
_02214
ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030
_02215
Position (kb)
2292
2293
2294 Strain fitness (log2 ratio)
-2
-1
0
1 at 2291.979 kb on - strand, within ECD_02213 at 2292.330 kb on - strand at 2292.330 kb on - strand at 2292.542 kb on + strand at 2292.584 kb on + strand at 2292.584 kb on + strand at 2292.585 kb on - strand at 2292.585 kb on - strand at 2292.851 kb on - strand at 2293.016 kb on + strand at 2293.016 kb on + strand at 2293.017 kb on - strand at 2293.017 kb on - strand at 2293.030 kb on - strand at 2293.034 kb on + strand at 2293.091 kb on + strand, within ECD_02214 at 2293.244 kb on + strand, within ECD_02214 at 2293.244 kb on + strand, within ECD_02214 at 2293.264 kb on - strand, within ECD_02214 at 2293.294 kb on - strand, within ECD_02214 at 2293.324 kb on + strand, within ECD_02214 at 2293.324 kb on + strand, within ECD_02214 at 2293.325 kb on - strand, within ECD_02214 at 2293.325 kb on - strand, within ECD_02214 at 2293.354 kb on + strand, within ECD_02214 at 2293.355 kb on - strand, within ECD_02214 at 2293.355 kb on - strand, within ECD_02214 at 2293.358 kb on + strand, within ECD_02214 at 2293.359 kb on - strand, within ECD_02214 at 2293.477 kb on - strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.478 kb on + strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.479 kb on - strand, within ECD_02214 at 2293.485 kb on + strand, within ECD_02214 at 2293.867 kb on - strand at 2293.889 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2294.128 kb on + strand at 2294.154 kb on - strand at 2294.216 kb on - strand at 2294.749 kb on + strand at 2294.760 kb on - strand at 2294.855 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,291,979 - ECD_02213 0.22 -0.3 2,292,330 - -0.3 2,292,330 - -0.8 2,292,542 + +0.2 2,292,584 + +1.3 2,292,584 + +0.1 2,292,585 - -0.3 2,292,585 - +0.3 2,292,851 - +0.3 2,293,016 + +0.1 2,293,016 + +0.8 2,293,017 - +0.6 2,293,017 - +0.2 2,293,030 - +0.3 2,293,034 + -0.4 2,293,091 + ECD_02214 0.14 -0.7 2,293,244 + ECD_02214 0.31 -0.8 2,293,244 + ECD_02214 0.31 -0.6 2,293,264 - ECD_02214 0.33 -0.1 2,293,294 - ECD_02214 0.36 +0.9 2,293,324 + ECD_02214 0.39 +1.0 2,293,324 + ECD_02214 0.39 -1.3 2,293,325 - ECD_02214 0.39 -0.4 2,293,325 - ECD_02214 0.39 -1.1 2,293,354 + ECD_02214 0.42 -0.4 2,293,355 - ECD_02214 0.43 -0.2 2,293,355 - ECD_02214 0.43 -1.0 2,293,358 + ECD_02214 0.43 -0.5 2,293,359 - ECD_02214 0.43 -0.9 2,293,477 - ECD_02214 0.56 -1.0 2,293,478 + ECD_02214 0.56 +0.1 2,293,478 + ECD_02214 0.56 -2.0 2,293,478 + ECD_02214 0.56 +0.1 2,293,478 + ECD_02214 0.56 -0.7 2,293,479 - ECD_02214 0.56 -0.6 2,293,479 - ECD_02214 0.56 -1.2 2,293,479 - ECD_02214 0.56 -1.5 2,293,479 - ECD_02214 0.56 +0.1 2,293,485 + ECD_02214 0.56 -0.3 2,293,867 - -1.1 2,293,889 - -0.8 2,293,896 - +0.1 2,293,896 - +0.9 2,293,896 - -0.5 2,294,128 + +0.2 2,294,154 - +0.8 2,294,216 - -0.3 2,294,749 + +0.0 2,294,760 - +0.6 2,294,855 + +0.4
Or see this region's nucleotide sequence