Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02203 and ECD_02204 overlap by 4 nucleotides ECD_02204 and ECD_02205 overlap by 4 nucleotides ECD_02205 and ECD_02206 are separated by 11 nucleotides ECD_02206 and ECD_02207 are separated by 14 nucleotides ECD_02207 and ECD_02208 overlap by 4 nucleotides
ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298
_02203
ECD_02204: ECD_02204 - NADH:ubiquinone oxidoreductase, membrane subunit K, at 2,282,295 to 2,282,597
_02204
ECD_02205: ECD_02205 - NADH:ubiquinone oxidoreductase, membrane subunit J, at 2,282,594 to 2,283,148
_02205
ECD_02206: ECD_02206 - NADH:ubiquinone oxidoreductase, chain I, at 2,283,160 to 2,283,702
_02206
ECD_02207: ECD_02207 - NADH:ubiquinone oxidoreductase, membrane subunit H, at 2,283,717 to 2,284,694
_02207
ECD_02208: ECD_02208 - NADH:ubiquinone oxidoreductase, chain G, at 2,284,691 to 2,287,417
_02208
Position (kb)
2283
2284 Strain fitness (log2 ratio)
-2
-1
0
1 at 2282.414 kb on - strand, within ECD_02204 at 2282.414 kb on - strand, within ECD_02204 at 2282.713 kb on + strand, within ECD_02205 at 2282.713 kb on + strand, within ECD_02205 at 2282.713 kb on + strand, within ECD_02205 at 2282.714 kb on - strand, within ECD_02205 at 2282.714 kb on - strand, within ECD_02205 at 2282.755 kb on + strand, within ECD_02205 at 2282.759 kb on - strand, within ECD_02205 at 2282.771 kb on - strand, within ECD_02205 at 2283.004 kb on - strand, within ECD_02205 at 2283.050 kb on - strand, within ECD_02205 at 2283.110 kb on + strand at 2283.131 kb on - strand at 2283.258 kb on + strand, within ECD_02206 at 2283.261 kb on - strand, within ECD_02206 at 2283.309 kb on - strand, within ECD_02206 at 2283.330 kb on - strand, within ECD_02206 at 2283.561 kb on + strand, within ECD_02206 at 2283.658 kb on - strand at 2283.695 kb on - strand at 2283.709 kb on - strand at 2283.805 kb on - strand at 2283.860 kb on + strand, within ECD_02207 at 2283.861 kb on - strand, within ECD_02207 at 2283.970 kb on + strand, within ECD_02207 at 2283.970 kb on + strand, within ECD_02207 at 2284.283 kb on + strand, within ECD_02207 at 2284.283 kb on + strand, within ECD_02207 at 2284.284 kb on - strand, within ECD_02207 at 2284.421 kb on + strand, within ECD_02207 at 2284.422 kb on - strand, within ECD_02207 at 2284.422 kb on - strand, within ECD_02207 at 2284.488 kb on - strand, within ECD_02207
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,282,414 - ECD_02204 0.39 -1.6 2,282,414 - ECD_02204 0.39 -0.1 2,282,713 + ECD_02205 0.21 -1.2 2,282,713 + ECD_02205 0.21 -0.4 2,282,713 + ECD_02205 0.21 +0.3 2,282,714 - ECD_02205 0.22 -0.4 2,282,714 - ECD_02205 0.22 -0.0 2,282,755 + ECD_02205 0.29 -0.7 2,282,759 - ECD_02205 0.30 -1.2 2,282,771 - ECD_02205 0.32 -0.8 2,283,004 - ECD_02205 0.74 -1.5 2,283,050 - ECD_02205 0.82 -1.3 2,283,110 + -0.3 2,283,131 - -0.7 2,283,258 + ECD_02206 0.18 -1.2 2,283,261 - ECD_02206 0.19 -1.3 2,283,309 - ECD_02206 0.27 +0.0 2,283,330 - ECD_02206 0.31 -0.9 2,283,561 + ECD_02206 0.74 -0.2 2,283,658 - -0.8 2,283,695 - -1.5 2,283,709 - -0.6 2,283,805 - -1.1 2,283,860 + ECD_02207 0.15 -1.7 2,283,861 - ECD_02207 0.15 +0.9 2,283,970 + ECD_02207 0.26 -2.5 2,283,970 + ECD_02207 0.26 -1.3 2,284,283 + ECD_02207 0.58 -0.5 2,284,283 + ECD_02207 0.58 -0.6 2,284,284 - ECD_02207 0.58 -2.0 2,284,421 + ECD_02207 0.72 -1.1 2,284,422 - ECD_02207 0.72 -1.3 2,284,422 - ECD_02207 0.72 -1.7 2,284,488 - ECD_02207 0.79 -1.2
Or see this region's nucleotide sequence