Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02161 and ECD_02162 overlap by 1 nucleotides ECD_02162 and ECD_02163 are separated by 53 nucleotides ECD_02163 and ECD_02164 are separated by 214 nucleotides
ECD_02161: ECD_02161 - ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein, at 2,237,753 to 2,238,883
_02161
ECD_02162: ECD_02162 - ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance, at 2,238,883 to 2,239,137
_02162
ECD_02163: ECD_02163 - acid-inducible Kdo/WaaP family putative kinase, at 2,239,191 to 2,239,841
_02163
ECD_02164: ECD_02164 - hypothetical protein, at 2,240,056 to 2,240,262
_02164
Position (kb) 2238
2239
2240 Strain fitness (log2 ratio) -1
0
1 at 2239.071 kb on + strand, within ECD_02162 at 2239.205 kb on - strand at 2239.364 kb on - strand, within ECD_02163 at 2239.367 kb on + strand, within ECD_02163 at 2239.368 kb on - strand, within ECD_02163 at 2239.758 kb on - strand, within ECD_02163 at 2239.879 kb on - strand at 2239.881 kb on - strand at 2239.881 kb on - strand at 2239.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,239,071 + ECD_02162 0.74 -0.8 2,239,205 - -0.1 2,239,364 - ECD_02163 0.27 -0.5 2,239,367 + ECD_02163 0.27 -0.3 2,239,368 - ECD_02163 0.27 -0.2 2,239,758 - ECD_02163 0.87 +0.7 2,239,879 - +0.2 2,239,881 - +0.4 2,239,881 - +0.3 2,239,881 - +0.0
Or see this region's nucleotide sequence