Strain Fitness in Escherichia coli BL21 around ECD_02132
Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-10 |
---|---|---|---|---|---|
remove | |||||
2,192,395 | - | +0.7 | |||
2,192,403 | + | +0.2 | |||
2,192,403 | + | +1.0 | |||
2,192,404 | - | +0.8 | |||
2,192,404 | - | -0.6 | |||
2,192,408 | - | -0.4 | |||
2,192,408 | - | +0.6 | |||
2,192,408 | - | -0.1 | |||
2,192,408 | - | -0.2 | |||
2,192,504 | - | ECD_02131 | 0.16 | +1.3 | |
2,192,504 | - | ECD_02131 | 0.16 | +0.3 | |
2,192,610 | - | ECD_02131 | 0.28 | +0.6 | |
2,192,663 | - | ECD_02131 | 0.34 | -0.1 | |
2,192,689 | - | ECD_02131 | 0.38 | -1.1 | |
2,192,777 | - | ECD_02131 | 0.48 | +0.3 | |
2,192,879 | - | ECD_02131 | 0.59 | +0.4 | |
2,193,069 | - | ECD_02131 | 0.81 | -0.1 | |
2,193,266 | + | +0.3 | |||
2,193,266 | + | -0.0 | |||
2,193,267 | - | -0.7 | |||
2,193,340 | + | ECD_02132 | 0.18 | -1.2 | |
2,193,693 | + | ECD_02132 | 0.69 | -0.2 | |
2,194,033 | - | +0.3 | |||
2,194,033 | - | +0.6 | |||
2,194,033 | - | -0.4 | |||
2,194,270 | - | ECD_02133 | 0.14 | +0.6 | |
2,194,345 | - | ECD_02133 | 0.17 | +0.3 | |
2,194,456 | - | ECD_02133 | 0.22 | +0.2 | |
2,194,456 | - | ECD_02133 | 0.22 | -0.8 | |
2,194,507 | - | ECD_02133 | 0.24 | +0.8 | |
2,194,534 | - | ECD_02133 | 0.25 | -0.2 | |
2,194,617 | + | ECD_02133 | 0.28 | +1.3 | |
2,194,618 | - | ECD_02133 | 0.28 | +0.2 | |
2,194,682 | + | ECD_02133 | 0.31 | -0.3 | |
2,194,683 | - | ECD_02133 | 0.31 | -0.4 |
Or see this region's nucleotide sequence