Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02100 and ECD_02101 are separated by 154 nucleotides ECD_02101 and ECD_02102 are separated by 222 nucleotides ECD_02102 and ECD_02103 are separated by 117 nucleotides
ECD_02100: ECD_02100 - UPF0153 cysteine cluster protein, at 2,159,890 to 2,160,144
_02100
ECD_02101: ECD_02101 - elongation factor P-like protein, at 2,160,299 to 2,160,871
_02101
ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560
_02102
ECD_02103: ECD_02103 - Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein, at 2,162,678 to 2,163,664
_02103
Position (kb)
2161
2162
2163 Strain fitness (log2 ratio)
-1
0
1
2 at 2160.144 kb on + strand at 2160.145 kb on - strand at 2160.192 kb on - strand at 2160.406 kb on + strand, within ECD_02101 at 2160.406 kb on + strand, within ECD_02101 at 2160.414 kb on - strand, within ECD_02101 at 2160.453 kb on + strand, within ECD_02101 at 2160.510 kb on - strand, within ECD_02101 at 2160.566 kb on + strand, within ECD_02101 at 2160.577 kb on + strand, within ECD_02101 at 2161.094 kb on - strand at 2161.132 kb on - strand at 2161.218 kb on + strand at 2161.326 kb on + strand, within ECD_02102 at 2161.326 kb on + strand, within ECD_02102 at 2161.326 kb on + strand, within ECD_02102 at 2161.327 kb on - strand, within ECD_02102 at 2161.328 kb on + strand, within ECD_02102 at 2161.397 kb on - strand, within ECD_02102 at 2161.488 kb on - strand, within ECD_02102 at 2161.492 kb on + strand, within ECD_02102 at 2161.493 kb on - strand, within ECD_02102 at 2161.493 kb on - strand, within ECD_02102 at 2161.655 kb on - strand, within ECD_02102 at 2162.003 kb on + strand, within ECD_02102 at 2162.082 kb on + strand, within ECD_02102 at 2162.083 kb on - strand, within ECD_02102 at 2162.117 kb on - strand, within ECD_02102 at 2162.131 kb on - strand, within ECD_02102 at 2162.152 kb on - strand, within ECD_02102 at 2162.253 kb on + strand, within ECD_02102 at 2162.651 kb on - strand at 2162.655 kb on + strand at 2162.656 kb on - strand at 2162.908 kb on + strand, within ECD_02103 at 2163.211 kb on - strand, within ECD_02103 at 2163.336 kb on + strand, within ECD_02103
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,160,144 + -0.2 2,160,145 - +0.7 2,160,192 - -0.2 2,160,406 + ECD_02101 0.19 +1.4 2,160,406 + ECD_02101 0.19 -0.2 2,160,414 - ECD_02101 0.20 +0.5 2,160,453 + ECD_02101 0.27 +0.9 2,160,510 - ECD_02101 0.37 -0.0 2,160,566 + ECD_02101 0.47 +1.3 2,160,577 + ECD_02101 0.49 +0.2 2,161,094 - +0.7 2,161,132 - +0.3 2,161,218 + +1.5 2,161,326 + ECD_02102 0.16 +0.3 2,161,326 + ECD_02102 0.16 +0.4 2,161,326 + ECD_02102 0.16 +0.2 2,161,327 - ECD_02102 0.16 +0.4 2,161,328 + ECD_02102 0.16 -0.0 2,161,397 - ECD_02102 0.21 +0.3 2,161,488 - ECD_02102 0.27 -0.1 2,161,492 + ECD_02102 0.27 +0.1 2,161,493 - ECD_02102 0.27 +0.6 2,161,493 - ECD_02102 0.27 +0.2 2,161,655 - ECD_02102 0.38 +0.5 2,162,003 + ECD_02102 0.62 -0.3 2,162,082 + ECD_02102 0.67 +0.4 2,162,083 - ECD_02102 0.67 +0.9 2,162,117 - ECD_02102 0.70 +0.8 2,162,131 - ECD_02102 0.71 +0.7 2,162,152 - ECD_02102 0.72 +2.1 2,162,253 + ECD_02102 0.79 +0.1 2,162,651 - -0.1 2,162,655 + +0.5 2,162,656 - +0.9 2,162,908 + ECD_02103 0.23 +0.4 2,163,211 - ECD_02103 0.54 -0.4 2,163,336 + ECD_02103 0.67 -0.1
Or see this region's nucleotide sequence