Strain Fitness in Escherichia coli BL21 around ECD_02102

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02100 and ECD_02101 are separated by 154 nucleotidesECD_02101 and ECD_02102 are separated by 222 nucleotidesECD_02102 and ECD_02103 are separated by 117 nucleotides ECD_02100: ECD_02100 - UPF0153 cysteine cluster protein, at 2,159,890 to 2,160,144 _02100 ECD_02101: ECD_02101 - elongation factor P-like protein, at 2,160,299 to 2,160,871 _02101 ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560 _02102 ECD_02103: ECD_02103 - Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein, at 2,162,678 to 2,163,664 _02103 Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -1 0 1 2at 2160.144 kb on + strandat 2160.145 kb on - strandat 2160.192 kb on - strandat 2160.406 kb on + strand, within ECD_02101at 2160.406 kb on + strand, within ECD_02101at 2160.414 kb on - strand, within ECD_02101at 2160.453 kb on + strand, within ECD_02101at 2160.510 kb on - strand, within ECD_02101at 2160.566 kb on + strand, within ECD_02101at 2160.577 kb on + strand, within ECD_02101at 2161.094 kb on - strandat 2161.132 kb on - strandat 2161.218 kb on + strandat 2161.326 kb on + strand, within ECD_02102at 2161.326 kb on + strand, within ECD_02102at 2161.326 kb on + strand, within ECD_02102at 2161.327 kb on - strand, within ECD_02102at 2161.328 kb on + strand, within ECD_02102at 2161.397 kb on - strand, within ECD_02102at 2161.488 kb on - strand, within ECD_02102at 2161.492 kb on + strand, within ECD_02102at 2161.493 kb on - strand, within ECD_02102at 2161.493 kb on - strand, within ECD_02102at 2161.655 kb on - strand, within ECD_02102at 2162.003 kb on + strand, within ECD_02102at 2162.082 kb on + strand, within ECD_02102at 2162.083 kb on - strand, within ECD_02102at 2162.117 kb on - strand, within ECD_02102at 2162.131 kb on - strand, within ECD_02102at 2162.152 kb on - strand, within ECD_02102at 2162.253 kb on + strand, within ECD_02102at 2162.651 kb on - strandat 2162.655 kb on + strandat 2162.656 kb on - strandat 2162.908 kb on + strand, within ECD_02103at 2163.211 kb on - strand, within ECD_02103at 2163.336 kb on + strand, within ECD_02103

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,160,144 + -0.2
2,160,145 - +0.7
2,160,192 - -0.2
2,160,406 + ECD_02101 0.19 +1.4
2,160,406 + ECD_02101 0.19 -0.2
2,160,414 - ECD_02101 0.20 +0.5
2,160,453 + ECD_02101 0.27 +0.9
2,160,510 - ECD_02101 0.37 -0.0
2,160,566 + ECD_02101 0.47 +1.3
2,160,577 + ECD_02101 0.49 +0.2
2,161,094 - +0.7
2,161,132 - +0.3
2,161,218 + +1.5
2,161,326 + ECD_02102 0.16 +0.3
2,161,326 + ECD_02102 0.16 +0.4
2,161,326 + ECD_02102 0.16 +0.2
2,161,327 - ECD_02102 0.16 +0.4
2,161,328 + ECD_02102 0.16 -0.0
2,161,397 - ECD_02102 0.21 +0.3
2,161,488 - ECD_02102 0.27 -0.1
2,161,492 + ECD_02102 0.27 +0.1
2,161,493 - ECD_02102 0.27 +0.6
2,161,493 - ECD_02102 0.27 +0.2
2,161,655 - ECD_02102 0.38 +0.5
2,162,003 + ECD_02102 0.62 -0.3
2,162,082 + ECD_02102 0.67 +0.4
2,162,083 - ECD_02102 0.67 +0.9
2,162,117 - ECD_02102 0.70 +0.8
2,162,131 - ECD_02102 0.71 +0.7
2,162,152 - ECD_02102 0.72 +2.1
2,162,253 + ECD_02102 0.79 +0.1
2,162,651 - -0.1
2,162,655 + +0.5
2,162,656 - +0.9
2,162,908 + ECD_02103 0.23 +0.4
2,163,211 - ECD_02103 0.54 -0.4
2,163,336 + ECD_02103 0.67 -0.1

Or see this region's nucleotide sequence