Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02083 and ECD_02084 are separated by 31 nucleotides ECD_02084 and ECD_02085 are separated by 293 nucleotides
ECD_02083: ECD_02083 - S-formylglutathione hydrolase, at 2,138,809 to 2,139,645
_02083
ECD_02084: ECD_02084 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter, at 2,139,677 to 2,141,668
_02084
ECD_02085: ECD_02085 - lysine transporter, at 2,141,962 to 2,143,431
_02085
Position (kb)
2139
2140
2141
2142 Strain fitness (log2 ratio)
-1
0
1 at 2138.729 kb on - strand at 2138.902 kb on - strand, within ECD_02083 at 2139.116 kb on - strand, within ECD_02083 at 2139.161 kb on - strand, within ECD_02083 at 2139.161 kb on - strand, within ECD_02083 at 2139.208 kb on - strand, within ECD_02083 at 2139.267 kb on + strand, within ECD_02083 at 2139.292 kb on + strand, within ECD_02083 at 2139.293 kb on - strand, within ECD_02083 at 2139.367 kb on + strand, within ECD_02083 at 2139.421 kb on + strand, within ECD_02083 at 2139.555 kb on + strand, within ECD_02083 at 2139.580 kb on + strand at 2139.584 kb on - strand at 2139.601 kb on - strand at 2139.726 kb on + strand at 2139.727 kb on - strand at 2139.727 kb on - strand at 2139.732 kb on + strand at 2139.732 kb on + strand at 2139.733 kb on - strand at 2139.733 kb on - strand at 2139.733 kb on - strand at 2139.883 kb on + strand, within ECD_02084 at 2140.017 kb on + strand, within ECD_02084 at 2140.018 kb on - strand, within ECD_02084 at 2140.018 kb on - strand, within ECD_02084 at 2140.024 kb on - strand, within ECD_02084 at 2140.024 kb on - strand, within ECD_02084 at 2140.088 kb on - strand, within ECD_02084 at 2140.115 kb on - strand, within ECD_02084 at 2140.115 kb on - strand, within ECD_02084 at 2140.288 kb on - strand, within ECD_02084 at 2140.288 kb on - strand, within ECD_02084 at 2140.351 kb on + strand, within ECD_02084 at 2140.352 kb on - strand, within ECD_02084 at 2140.391 kb on - strand, within ECD_02084 at 2140.464 kb on + strand, within ECD_02084 at 2140.465 kb on - strand, within ECD_02084 at 2140.708 kb on - strand, within ECD_02084 at 2140.825 kb on + strand, within ECD_02084 at 2140.826 kb on - strand, within ECD_02084 at 2141.118 kb on + strand, within ECD_02084 at 2141.119 kb on - strand, within ECD_02084 at 2141.214 kb on - strand, within ECD_02084 at 2141.377 kb on - strand, within ECD_02084 at 2141.398 kb on + strand, within ECD_02084 at 2141.963 kb on + strand at 2142.000 kb on - strand at 2142.045 kb on + strand at 2142.072 kb on - strand at 2142.072 kb on - strand at 2142.072 kb on - strand at 2142.123 kb on - strand, within ECD_02085 at 2142.230 kb on - strand, within ECD_02085 at 2142.323 kb on - strand, within ECD_02085 at 2142.384 kb on - strand, within ECD_02085 at 2142.462 kb on - strand, within ECD_02085 at 2142.462 kb on - strand, within ECD_02085 at 2142.462 kb on - strand, within ECD_02085 at 2142.475 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085 at 2142.483 kb on - strand, within ECD_02085
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,138,729 - +0.8 2,138,902 - ECD_02083 0.11 -0.0 2,139,116 - ECD_02083 0.37 -1.6 2,139,161 - ECD_02083 0.42 +0.1 2,139,161 - ECD_02083 0.42 +0.3 2,139,208 - ECD_02083 0.48 +0.0 2,139,267 + ECD_02083 0.55 +0.0 2,139,292 + ECD_02083 0.58 -0.5 2,139,293 - ECD_02083 0.58 -0.8 2,139,367 + ECD_02083 0.67 +0.2 2,139,421 + ECD_02083 0.73 -0.8 2,139,555 + ECD_02083 0.89 -0.0 2,139,580 + -0.2 2,139,584 - +0.9 2,139,601 - -0.3 2,139,726 + -0.7 2,139,727 - +0.4 2,139,727 - -0.5 2,139,732 + +0.2 2,139,732 + +0.0 2,139,733 - +0.8 2,139,733 - +0.5 2,139,733 - -0.2 2,139,883 + ECD_02084 0.10 -0.5 2,140,017 + ECD_02084 0.17 -0.6 2,140,018 - ECD_02084 0.17 -0.2 2,140,018 - ECD_02084 0.17 -0.8 2,140,024 - ECD_02084 0.17 +0.7 2,140,024 - ECD_02084 0.17 -1.2 2,140,088 - ECD_02084 0.21 -0.1 2,140,115 - ECD_02084 0.22 -0.1 2,140,115 - ECD_02084 0.22 +0.3 2,140,288 - ECD_02084 0.31 -0.5 2,140,288 - ECD_02084 0.31 +0.3 2,140,351 + ECD_02084 0.34 -0.1 2,140,352 - ECD_02084 0.34 +0.2 2,140,391 - ECD_02084 0.36 -0.4 2,140,464 + ECD_02084 0.40 -0.1 2,140,465 - ECD_02084 0.40 +0.4 2,140,708 - ECD_02084 0.52 -1.0 2,140,825 + ECD_02084 0.58 +0.5 2,140,826 - ECD_02084 0.58 -0.3 2,141,118 + ECD_02084 0.72 -0.3 2,141,119 - ECD_02084 0.72 -0.0 2,141,214 - ECD_02084 0.77 -0.2 2,141,377 - ECD_02084 0.85 -0.1 2,141,398 + ECD_02084 0.86 -0.0 2,141,963 + +0.4 2,142,000 - +0.1 2,142,045 + +0.2 2,142,072 - +0.5 2,142,072 - -0.0 2,142,072 - +0.4 2,142,123 - ECD_02085 0.11 +0.2 2,142,230 - ECD_02085 0.18 -0.6 2,142,323 - ECD_02085 0.25 +0.6 2,142,384 - ECD_02085 0.29 -0.3 2,142,462 - ECD_02085 0.34 -0.2 2,142,462 - ECD_02085 0.34 -0.3 2,142,462 - ECD_02085 0.34 +0.2 2,142,475 - ECD_02085 0.35 -0.8 2,142,483 - ECD_02085 0.35 +0.9 2,142,483 - ECD_02085 0.35 -0.0 2,142,483 - ECD_02085 0.35 +0.6 2,142,483 - ECD_02085 0.35 +0.6 2,142,483 - ECD_02085 0.35 -0.1 2,142,483 - ECD_02085 0.35 +0.0 2,142,483 - ECD_02085 0.35 +0.9 2,142,483 - ECD_02085 0.35 +0.5 2,142,483 - ECD_02085 0.35 +0.2 2,142,483 - ECD_02085 0.35 +0.1 2,142,483 - ECD_02085 0.35 +0.4 2,142,483 - ECD_02085 0.35 +0.2 2,142,483 - ECD_02085 0.35 -0.1
Or see this region's nucleotide sequence