Strain Fitness in Escherichia coli BL21 around ECD_02084

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02083 and ECD_02084 are separated by 31 nucleotidesECD_02084 and ECD_02085 are separated by 293 nucleotides ECD_02083: ECD_02083 - S-formylglutathione hydrolase, at 2,138,809 to 2,139,645 _02083 ECD_02084: ECD_02084 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter, at 2,139,677 to 2,141,668 _02084 ECD_02085: ECD_02085 - lysine transporter, at 2,141,962 to 2,143,431 _02085 Position (kb) 2139 2140 2141 2142Strain fitness (log2 ratio) -1 0 1at 2138.729 kb on - strandat 2138.902 kb on - strand, within ECD_02083at 2139.116 kb on - strand, within ECD_02083at 2139.161 kb on - strand, within ECD_02083at 2139.161 kb on - strand, within ECD_02083at 2139.208 kb on - strand, within ECD_02083at 2139.267 kb on + strand, within ECD_02083at 2139.292 kb on + strand, within ECD_02083at 2139.293 kb on - strand, within ECD_02083at 2139.367 kb on + strand, within ECD_02083at 2139.421 kb on + strand, within ECD_02083at 2139.555 kb on + strand, within ECD_02083at 2139.580 kb on + strandat 2139.584 kb on - strandat 2139.601 kb on - strandat 2139.726 kb on + strandat 2139.727 kb on - strandat 2139.727 kb on - strandat 2139.732 kb on + strandat 2139.732 kb on + strandat 2139.733 kb on - strandat 2139.733 kb on - strandat 2139.733 kb on - strandat 2139.883 kb on + strand, within ECD_02084at 2140.017 kb on + strand, within ECD_02084at 2140.018 kb on - strand, within ECD_02084at 2140.018 kb on - strand, within ECD_02084at 2140.024 kb on - strand, within ECD_02084at 2140.024 kb on - strand, within ECD_02084at 2140.088 kb on - strand, within ECD_02084at 2140.115 kb on - strand, within ECD_02084at 2140.115 kb on - strand, within ECD_02084at 2140.288 kb on - strand, within ECD_02084at 2140.288 kb on - strand, within ECD_02084at 2140.351 kb on + strand, within ECD_02084at 2140.352 kb on - strand, within ECD_02084at 2140.391 kb on - strand, within ECD_02084at 2140.464 kb on + strand, within ECD_02084at 2140.465 kb on - strand, within ECD_02084at 2140.708 kb on - strand, within ECD_02084at 2140.825 kb on + strand, within ECD_02084at 2140.826 kb on - strand, within ECD_02084at 2141.118 kb on + strand, within ECD_02084at 2141.119 kb on - strand, within ECD_02084at 2141.214 kb on - strand, within ECD_02084at 2141.377 kb on - strand, within ECD_02084at 2141.398 kb on + strand, within ECD_02084at 2141.963 kb on + strandat 2142.000 kb on - strandat 2142.045 kb on + strandat 2142.072 kb on - strandat 2142.072 kb on - strandat 2142.072 kb on - strandat 2142.123 kb on - strand, within ECD_02085at 2142.230 kb on - strand, within ECD_02085at 2142.323 kb on - strand, within ECD_02085at 2142.384 kb on - strand, within ECD_02085at 2142.462 kb on - strand, within ECD_02085at 2142.462 kb on - strand, within ECD_02085at 2142.462 kb on - strand, within ECD_02085at 2142.475 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085at 2142.483 kb on - strand, within ECD_02085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
2,138,729 - +0.8
2,138,902 - ECD_02083 0.11 -0.0
2,139,116 - ECD_02083 0.37 -1.6
2,139,161 - ECD_02083 0.42 +0.1
2,139,161 - ECD_02083 0.42 +0.3
2,139,208 - ECD_02083 0.48 +0.0
2,139,267 + ECD_02083 0.55 +0.0
2,139,292 + ECD_02083 0.58 -0.5
2,139,293 - ECD_02083 0.58 -0.8
2,139,367 + ECD_02083 0.67 +0.2
2,139,421 + ECD_02083 0.73 -0.8
2,139,555 + ECD_02083 0.89 -0.0
2,139,580 + -0.2
2,139,584 - +0.9
2,139,601 - -0.3
2,139,726 + -0.7
2,139,727 - +0.4
2,139,727 - -0.5
2,139,732 + +0.2
2,139,732 + +0.0
2,139,733 - +0.8
2,139,733 - +0.5
2,139,733 - -0.2
2,139,883 + ECD_02084 0.10 -0.5
2,140,017 + ECD_02084 0.17 -0.6
2,140,018 - ECD_02084 0.17 -0.2
2,140,018 - ECD_02084 0.17 -0.8
2,140,024 - ECD_02084 0.17 +0.7
2,140,024 - ECD_02084 0.17 -1.2
2,140,088 - ECD_02084 0.21 -0.1
2,140,115 - ECD_02084 0.22 -0.1
2,140,115 - ECD_02084 0.22 +0.3
2,140,288 - ECD_02084 0.31 -0.5
2,140,288 - ECD_02084 0.31 +0.3
2,140,351 + ECD_02084 0.34 -0.1
2,140,352 - ECD_02084 0.34 +0.2
2,140,391 - ECD_02084 0.36 -0.4
2,140,464 + ECD_02084 0.40 -0.1
2,140,465 - ECD_02084 0.40 +0.4
2,140,708 - ECD_02084 0.52 -1.0
2,140,825 + ECD_02084 0.58 +0.5
2,140,826 - ECD_02084 0.58 -0.3
2,141,118 + ECD_02084 0.72 -0.3
2,141,119 - ECD_02084 0.72 -0.0
2,141,214 - ECD_02084 0.77 -0.2
2,141,377 - ECD_02084 0.85 -0.1
2,141,398 + ECD_02084 0.86 -0.0
2,141,963 + +0.4
2,142,000 - +0.1
2,142,045 + +0.2
2,142,072 - +0.5
2,142,072 - -0.0
2,142,072 - +0.4
2,142,123 - ECD_02085 0.11 +0.2
2,142,230 - ECD_02085 0.18 -0.6
2,142,323 - ECD_02085 0.25 +0.6
2,142,384 - ECD_02085 0.29 -0.3
2,142,462 - ECD_02085 0.34 -0.2
2,142,462 - ECD_02085 0.34 -0.3
2,142,462 - ECD_02085 0.34 +0.2
2,142,475 - ECD_02085 0.35 -0.8
2,142,483 - ECD_02085 0.35 +0.9
2,142,483 - ECD_02085 0.35 -0.0
2,142,483 - ECD_02085 0.35 +0.6
2,142,483 - ECD_02085 0.35 +0.6
2,142,483 - ECD_02085 0.35 -0.1
2,142,483 - ECD_02085 0.35 +0.0
2,142,483 - ECD_02085 0.35 +0.9
2,142,483 - ECD_02085 0.35 +0.5
2,142,483 - ECD_02085 0.35 +0.2
2,142,483 - ECD_02085 0.35 +0.1
2,142,483 - ECD_02085 0.35 +0.4
2,142,483 - ECD_02085 0.35 +0.2
2,142,483 - ECD_02085 0.35 -0.1

Or see this region's nucleotide sequence