Strain Fitness in Escherichia coli BL21 around ECD_02073

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02072 and ECD_02073 are separated by 149 nucleotidesECD_02073 and ECD_02074 are separated by 2 nucleotidesECD_02074 and ECD_02075 are separated by 193 nucleotides ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632 _02072 ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501 _02073 ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743 _02074 ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175 _02075 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -2 -1 0 1at 2126.814 kb on - strandat 2126.829 kb on + strandat 2127.119 kb on + strand, within ECD_02072at 2127.226 kb on - strand, within ECD_02072at 2127.263 kb on + strand, within ECD_02072at 2127.363 kb on + strand, within ECD_02072at 2127.364 kb on - strand, within ECD_02072at 2127.364 kb on - strand, within ECD_02072at 2127.369 kb on - strand, within ECD_02072at 2127.410 kb on + strand, within ECD_02072at 2127.501 kb on + strand, within ECD_02072at 2127.630 kb on + strandat 2127.810 kb on + strandat 2127.882 kb on - strand, within ECD_02073at 2127.882 kb on - strand, within ECD_02073at 2127.883 kb on + strand, within ECD_02073at 2127.884 kb on - strand, within ECD_02073at 2127.884 kb on - strand, within ECD_02073at 2127.975 kb on - strand, within ECD_02073at 2128.010 kb on + strand, within ECD_02073at 2128.035 kb on + strand, within ECD_02073at 2128.315 kb on - strand, within ECD_02073

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,126,814 - -0.4
2,126,829 + +0.9
2,127,119 + ECD_02072 0.42 +0.2
2,127,226 - ECD_02072 0.54 +1.0
2,127,263 + ECD_02072 0.58 +0.2
2,127,363 + ECD_02072 0.69 -0.3
2,127,364 - ECD_02072 0.70 -0.3
2,127,364 - ECD_02072 0.70 -0.4
2,127,369 - ECD_02072 0.70 +0.3
2,127,410 + ECD_02072 0.75 -0.6
2,127,501 + ECD_02072 0.85 +0.2
2,127,630 + +1.2
2,127,810 + -0.7
2,127,882 - ECD_02073 0.14 -1.0
2,127,882 - ECD_02073 0.14 +0.2
2,127,883 + ECD_02073 0.14 -1.8
2,127,884 - ECD_02073 0.14 -2.6
2,127,884 - ECD_02073 0.14 -0.9
2,127,975 - ECD_02073 0.27 -1.8
2,128,010 + ECD_02073 0.32 -1.1
2,128,035 + ECD_02073 0.35 -1.6
2,128,315 - ECD_02073 0.74 +0.6

Or see this region's nucleotide sequence