Strain Fitness in Escherichia coli BL21 around ECD_02065
Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-10 |
---|---|---|---|---|---|
remove | |||||
2,118,984 | + | ECD_02064 | 0.15 | -0.1 | |
2,118,985 | - | ECD_02064 | 0.15 | +0.4 | |
2,119,072 | + | ECD_02064 | 0.25 | -0.7 | |
2,119,126 | + | ECD_02064 | 0.30 | -1.1 | |
2,119,126 | + | ECD_02064 | 0.30 | -0.9 | |
2,119,127 | - | ECD_02064 | 0.31 | +0.1 | |
2,119,130 | - | ECD_02064 | 0.31 | +0.8 | |
2,119,833 | + | -0.8 | |||
2,119,834 | - | -0.2 | |||
2,119,950 | - | +0.1 | |||
2,119,978 | + | -0.2 | |||
2,119,978 | + | -0.2 | |||
2,119,978 | + | +0.4 | |||
2,120,037 | + | ECD_02065 | 0.15 | -0.8 | |
2,120,038 | - | ECD_02065 | 0.15 | -0.1 | |
2,120,046 | + | ECD_02065 | 0.17 | -0.8 | |
2,120,047 | - | ECD_02065 | 0.17 | +0.6 | |
2,120,094 | - | ECD_02065 | 0.25 | -0.3 | |
2,120,111 | + | ECD_02065 | 0.28 | +0.3 | |
2,120,160 | - | ECD_02065 | 0.36 | +0.4 | |
2,120,578 | - | +0.2 | |||
2,120,578 | - | -0.4 | |||
2,120,579 | + | +0.2 | |||
2,120,580 | - | +0.7 | |||
2,120,704 | + | -0.6 | |||
2,120,716 | + | +0.3 | |||
2,120,717 | - | +0.5 | |||
2,120,722 | + | -0.5 | |||
2,120,722 | + | +0.1 | |||
2,120,723 | - | +0.7 | |||
2,120,916 | + | ECD_02066 | 0.36 | +0.2 | |
2,121,008 | - | ECD_02066 | 0.52 | -0.3 | |
2,121,011 | + | ECD_02066 | 0.53 | -0.4 | |
2,121,011 | + | ECD_02066 | 0.53 | +0.3 |
Or see this region's nucleotide sequence