Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02055 and ECD_02056 are separated by 221 nucleotides ECD_02056 and ECD_02057 are separated by 59 nucleotides ECD_02057 and ECD_02058 overlap by 20 nucleotides ECD_02058 and ECD_02059 are separated by 4 nucleotides
ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507
_02055
ECD_02056: ECD_02056 - transcriptional activator of csgD and csgBA, at 2,109,729 to 2,110,460
_02056
ECD_02057: ECD_02057 - putative membrane protein, at 2,110,520 to 2,110,627
_02057
ECD_02058: ECD_02058 - putative ABC transporter permease, at 2,110,608 to 2,111,339
_02058
ECD_02059: ECD_02059 - putative ABC transporter ATPase, at 2,111,344 to 2,112,270
_02059
Position (kb)
2109
2110
2111 Strain fitness (log2 ratio)
-1
0
1 at 2108.931 kb on + strand, within ECD_02055 at 2109.014 kb on + strand, within ECD_02055 at 2109.217 kb on + strand, within ECD_02055 at 2109.218 kb on - strand, within ECD_02055 at 2109.218 kb on - strand, within ECD_02055 at 2109.298 kb on - strand, within ECD_02055 at 2109.307 kb on - strand, within ECD_02055 at 2109.369 kb on - strand at 2109.643 kb on + strand at 2109.773 kb on + strand at 2110.000 kb on - strand, within ECD_02056 at 2110.091 kb on + strand, within ECD_02056 at 2110.173 kb on + strand, within ECD_02056 at 2110.174 kb on - strand, within ECD_02056 at 2110.250 kb on + strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056 at 2110.519 kb on + strand at 2110.527 kb on + strand at 2110.528 kb on - strand at 2110.603 kb on + strand, within ECD_02057 at 2110.609 kb on + strand at 2110.706 kb on - strand, within ECD_02058 at 2110.849 kb on - strand, within ECD_02058 at 2111.073 kb on - strand, within ECD_02058
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,108,931 + ECD_02055 0.66 +0.2 2,109,014 + ECD_02055 0.71 +0.2 2,109,217 + ECD_02055 0.83 +0.2 2,109,218 - ECD_02055 0.83 +0.3 2,109,218 - ECD_02055 0.83 -0.1 2,109,298 - ECD_02055 0.88 +0.2 2,109,307 - ECD_02055 0.88 -0.3 2,109,369 - +0.6 2,109,643 + -0.0 2,109,773 + +0.1 2,110,000 - ECD_02056 0.37 -0.1 2,110,091 + ECD_02056 0.49 -1.4 2,110,173 + ECD_02056 0.61 -0.2 2,110,174 - ECD_02056 0.61 +0.1 2,110,250 + ECD_02056 0.71 +1.5 2,110,359 - ECD_02056 0.86 +0.6 2,110,359 - ECD_02056 0.86 +0.2 2,110,519 + -0.7 2,110,527 + -1.0 2,110,528 - +0.3 2,110,603 + ECD_02057 0.77 +0.0 2,110,609 + -0.1 2,110,706 - ECD_02058 0.13 -0.1 2,110,849 - ECD_02058 0.33 +0.5 2,111,073 - ECD_02058 0.64 -0.9
Or see this region's nucleotide sequence