Strain Fitness in Escherichia coli BL21 around ECD_02056

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02055 and ECD_02056 are separated by 221 nucleotidesECD_02056 and ECD_02057 are separated by 59 nucleotidesECD_02057 and ECD_02058 overlap by 20 nucleotidesECD_02058 and ECD_02059 are separated by 4 nucleotides ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507 _02055 ECD_02056: ECD_02056 - transcriptional activator of csgD and csgBA, at 2,109,729 to 2,110,460 _02056 ECD_02057: ECD_02057 - putative membrane protein, at 2,110,520 to 2,110,627 _02057 ECD_02058: ECD_02058 - putative ABC transporter permease, at 2,110,608 to 2,111,339 _02058 ECD_02059: ECD_02059 - putative ABC transporter ATPase, at 2,111,344 to 2,112,270 _02059 Position (kb) 2109 2110 2111Strain fitness (log2 ratio) -1 0 1at 2108.931 kb on + strand, within ECD_02055at 2109.014 kb on + strand, within ECD_02055at 2109.217 kb on + strand, within ECD_02055at 2109.218 kb on - strand, within ECD_02055at 2109.218 kb on - strand, within ECD_02055at 2109.298 kb on - strand, within ECD_02055at 2109.307 kb on - strand, within ECD_02055at 2109.369 kb on - strandat 2109.643 kb on + strandat 2109.773 kb on + strandat 2110.000 kb on - strand, within ECD_02056at 2110.091 kb on + strand, within ECD_02056at 2110.173 kb on + strand, within ECD_02056at 2110.174 kb on - strand, within ECD_02056at 2110.250 kb on + strand, within ECD_02056at 2110.359 kb on - strand, within ECD_02056at 2110.359 kb on - strand, within ECD_02056at 2110.519 kb on + strandat 2110.527 kb on + strandat 2110.528 kb on - strandat 2110.603 kb on + strand, within ECD_02057at 2110.609 kb on + strandat 2110.706 kb on - strand, within ECD_02058at 2110.849 kb on - strand, within ECD_02058at 2111.073 kb on - strand, within ECD_02058

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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2,108,931 + ECD_02055 0.66 +0.2
2,109,014 + ECD_02055 0.71 +0.2
2,109,217 + ECD_02055 0.83 +0.2
2,109,218 - ECD_02055 0.83 +0.3
2,109,218 - ECD_02055 0.83 -0.1
2,109,298 - ECD_02055 0.88 +0.2
2,109,307 - ECD_02055 0.88 -0.3
2,109,369 - +0.6
2,109,643 + -0.0
2,109,773 + +0.1
2,110,000 - ECD_02056 0.37 -0.1
2,110,091 + ECD_02056 0.49 -1.4
2,110,173 + ECD_02056 0.61 -0.2
2,110,174 - ECD_02056 0.61 +0.1
2,110,250 + ECD_02056 0.71 +1.5
2,110,359 - ECD_02056 0.86 +0.6
2,110,359 - ECD_02056 0.86 +0.2
2,110,519 + -0.7
2,110,527 + -1.0
2,110,528 - +0.3
2,110,603 + ECD_02057 0.77 +0.0
2,110,609 + -0.1
2,110,706 - ECD_02058 0.13 -0.1
2,110,849 - ECD_02058 0.33 +0.5
2,111,073 - ECD_02058 0.64 -0.9

Or see this region's nucleotide sequence