Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02026 and ECD_02027 overlap by 4 nucleotides ECD_02027 and ECD_02028 overlap by 4 nucleotides ECD_02028 and ECD_02029 overlap by 27 nucleotides
ECD_02026: ECD_02026 - nucleoside transporter, low affinity, at 2,076,616 to 2,077,893
_02026
ECD_02027: ECD_02027 - ADP-ribosylglycohydrolase family protein, at 2,077,890 to 2,078,894
_02027
ECD_02028: ECD_02028 - putative kinase, at 2,078,891 to 2,079,856
_02028
ECD_02029: ECD_02029 - putative DNA-binding transcriptional regulator, at 2,079,830 to 2,080,576
_02029
Position (kb)
2077
2078
2079 Strain fitness (log2 ratio)
-1
0
1 at 2076.928 kb on + strand, within ECD_02026 at 2076.928 kb on + strand, within ECD_02026 at 2076.931 kb on - strand, within ECD_02026 at 2077.297 kb on + strand, within ECD_02026 at 2077.301 kb on - strand, within ECD_02026 at 2077.504 kb on + strand, within ECD_02026 at 2077.514 kb on - strand, within ECD_02026 at 2077.550 kb on + strand, within ECD_02026 at 2077.579 kb on + strand, within ECD_02026 at 2077.579 kb on + strand, within ECD_02026 at 2077.585 kb on + strand, within ECD_02026 at 2077.617 kb on + strand, within ECD_02026 at 2077.887 kb on + strand at 2077.887 kb on + strand at 2078.052 kb on - strand, within ECD_02027 at 2078.410 kb on + strand, within ECD_02027 at 2078.637 kb on - strand, within ECD_02027 at 2078.847 kb on + strand at 2078.869 kb on - strand at 2078.929 kb on - strand at 2079.171 kb on + strand, within ECD_02028 at 2079.430 kb on + strand, within ECD_02028 at 2079.623 kb on + strand, within ECD_02028 at 2079.714 kb on + strand, within ECD_02028 at 2079.832 kb on - strand at 2079.832 kb on - strand at 2079.854 kb on + strand at 2079.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 2,076,928 + ECD_02026 0.24 +1.0 2,076,928 + ECD_02026 0.24 -0.0 2,076,931 - ECD_02026 0.25 -0.5 2,077,297 + ECD_02026 0.53 -0.5 2,077,301 - ECD_02026 0.54 -0.6 2,077,504 + ECD_02026 0.69 -0.5 2,077,514 - ECD_02026 0.70 +0.3 2,077,550 + ECD_02026 0.73 -0.0 2,077,579 + ECD_02026 0.75 +0.6 2,077,579 + ECD_02026 0.75 -0.4 2,077,585 + ECD_02026 0.76 -0.1 2,077,617 + ECD_02026 0.78 +0.3 2,077,887 + -0.0 2,077,887 + -0.0 2,078,052 - ECD_02027 0.16 -0.0 2,078,410 + ECD_02027 0.52 +0.0 2,078,637 - ECD_02027 0.74 +0.1 2,078,847 + -0.1 2,078,869 - +0.4 2,078,929 - -0.2 2,079,171 + ECD_02028 0.29 -0.3 2,079,430 + ECD_02028 0.56 -0.9 2,079,623 + ECD_02028 0.76 +0.2 2,079,714 + ECD_02028 0.85 +0.8 2,079,832 - +0.0 2,079,832 - -0.2 2,079,854 + -0.8 2,079,889 + +0.3
Or see this region's nucleotide sequence