Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01926 and ECD_01927 overlap by 19 nucleotides ECD_01927 and ECD_01928 overlap by 7 nucleotides ECD_01928 and ECD_01929 are separated by 95 nucleotides
ECD_01926: ECD_01926 - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase, at 1,990,928 to 1,991,665
_01926
ECD_01927: ECD_01927 - imidazole glycerol phosphate synthase, catalytic subunit with HisH, at 1,991,647 to 1,992,423
_01927
ECD_01928: ECD_01928 - phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase, at 1,992,417 to 1,993,028
_01928
ECD_01929: ECD_01929 - regulator of length of O-antigen component of lipopolysaccharide chains, at 1,993,124 to 1,994,104
_01929
Position (kb)
1992
1993
1994 Strain fitness (log2 ratio)
-2
-1
0
1 at 1991.484 kb on + strand, within ECD_01926 at 1991.484 kb on + strand, within ECD_01926 at 1991.486 kb on + strand, within ECD_01926 at 1991.663 kb on + strand at 1992.416 kb on + strand at 1992.791 kb on + strand, within ECD_01928 at 1992.816 kb on + strand, within ECD_01928 at 1992.904 kb on + strand, within ECD_01928 at 1993.263 kb on - strand, within ECD_01929 at 1993.342 kb on - strand, within ECD_01929 at 1993.382 kb on - strand, within ECD_01929 at 1993.382 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.436 kb on - strand, within ECD_01929 at 1993.654 kb on - strand, within ECD_01929 at 1993.699 kb on - strand, within ECD_01929 at 1993.730 kb on - strand, within ECD_01929 at 1993.821 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.868 kb on - strand, within ECD_01929 at 1993.886 kb on - strand, within ECD_01929 at 1993.886 kb on - strand, within ECD_01929
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,991,484 + ECD_01926 0.75 -1.1 1,991,484 + ECD_01926 0.75 -0.9 1,991,486 + ECD_01926 0.76 +0.2 1,991,663 + -1.0 1,992,416 + -0.5 1,992,791 + ECD_01928 0.61 -2.4 1,992,816 + ECD_01928 0.65 +0.2 1,992,904 + ECD_01928 0.80 -0.7 1,993,263 - ECD_01929 0.14 -0.3 1,993,342 - ECD_01929 0.22 +0.0 1,993,382 - ECD_01929 0.26 -0.2 1,993,382 - ECD_01929 0.26 +0.2 1,993,424 - ECD_01929 0.31 +0.2 1,993,424 - ECD_01929 0.31 +0.1 1,993,424 - ECD_01929 0.31 +0.0 1,993,436 - ECD_01929 0.32 +0.7 1,993,654 - ECD_01929 0.54 -0.2 1,993,699 - ECD_01929 0.59 +0.2 1,993,730 - ECD_01929 0.62 -0.1 1,993,821 - ECD_01929 0.71 +0.3 1,993,864 - ECD_01929 0.75 +0.9 1,993,864 - ECD_01929 0.75 +0.1 1,993,864 - ECD_01929 0.75 +0.1 1,993,868 - ECD_01929 0.76 +0.1 1,993,886 - ECD_01929 0.78 -1.3 1,993,886 - ECD_01929 0.78 +0.1
Or see this region's nucleotide sequence