Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01923 and ECD_01924 overlap by 1 nucleotides ECD_01924 and ECD_01925 overlap by 1 nucleotides ECD_01925 and ECD_01926 overlap by 1 nucleotides
ECD_01923: ECD_01923 - histidinol-phosphate aminotransferase, at 1,988,201 to 1,989,271
_01923
ECD_01924: ECD_01924 - histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase, at 1,989,271 to 1,990,338
_01924
ECD_01925: ECD_01925 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,990,338 to 1,990,928
_01925
ECD_01926: ECD_01926 - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase, at 1,990,928 to 1,991,665
_01926
Position (kb)
1989
1990
1991 Strain fitness (log2 ratio)
-2
-1
0
1 at 1988.316 kb on - strand, within ECD_01923 at 1988.399 kb on + strand, within ECD_01923 at 1988.409 kb on - strand, within ECD_01923 at 1988.418 kb on + strand, within ECD_01923 at 1988.537 kb on + strand, within ECD_01923 at 1988.538 kb on - strand, within ECD_01923 at 1989.113 kb on - strand, within ECD_01923 at 1989.133 kb on + strand, within ECD_01923 at 1989.389 kb on + strand, within ECD_01924 at 1989.610 kb on + strand, within ECD_01924 at 1989.943 kb on + strand, within ECD_01924 at 1990.112 kb on - strand, within ECD_01924 at 1990.189 kb on + strand, within ECD_01924 at 1990.247 kb on + strand at 1990.336 kb on + strand at 1990.755 kb on + strand, within ECD_01925 at 1990.756 kb on - strand, within ECD_01925 at 1990.808 kb on + strand, within ECD_01925 at 1990.933 kb on + strand at 1990.944 kb on + strand at 1990.968 kb on + strand at 1991.298 kb on + strand, within ECD_01926
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,988,316 - ECD_01923 0.11 -0.5 1,988,399 + ECD_01923 0.18 -2.6 1,988,409 - ECD_01923 0.19 -1.3 1,988,418 + ECD_01923 0.20 -1.1 1,988,537 + ECD_01923 0.31 -1.3 1,988,538 - ECD_01923 0.31 -1.5 1,989,113 - ECD_01923 0.85 -1.1 1,989,133 + ECD_01923 0.87 -0.8 1,989,389 + ECD_01924 0.11 -1.2 1,989,610 + ECD_01924 0.32 -1.7 1,989,943 + ECD_01924 0.63 -1.5 1,990,112 - ECD_01924 0.79 -1.4 1,990,189 + ECD_01924 0.86 -1.6 1,990,247 + -2.1 1,990,336 + -0.8 1,990,755 + ECD_01925 0.71 -1.6 1,990,756 - ECD_01925 0.71 -2.0 1,990,808 + ECD_01925 0.80 -2.5 1,990,933 + -0.6 1,990,944 + -2.1 1,990,968 + -0.6 1,991,298 + ECD_01926 0.50 -1.3
Or see this region's nucleotide sequence