Strain Fitness in Escherichia coli BL21 around ECD_01923

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01922 and ECD_01923 overlap by 4 nucleotidesECD_01923 and ECD_01924 overlap by 1 nucleotides ECD_01922: ECD_01922 - bifunctional histidinal dehydrogenase/ histidinol dehydrogenase, at 1,986,900 to 1,988,204 _01922 ECD_01923: ECD_01923 - histidinol-phosphate aminotransferase, at 1,988,201 to 1,989,271 _01923 ECD_01924: ECD_01924 - histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase, at 1,989,271 to 1,990,338 _01924 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -3 -2 -1 0 1at 1987.225 kb on + strand, within ECD_01922at 1987.287 kb on + strand, within ECD_01922at 1987.590 kb on + strand, within ECD_01922at 1987.829 kb on + strand, within ECD_01922at 1988.316 kb on - strand, within ECD_01923at 1988.399 kb on + strand, within ECD_01923at 1988.409 kb on - strand, within ECD_01923at 1988.418 kb on + strand, within ECD_01923at 1988.537 kb on + strand, within ECD_01923at 1988.538 kb on - strand, within ECD_01923at 1989.113 kb on - strand, within ECD_01923at 1989.133 kb on + strand, within ECD_01923at 1989.389 kb on + strand, within ECD_01924at 1989.610 kb on + strand, within ECD_01924at 1989.943 kb on + strand, within ECD_01924at 1990.112 kb on - strand, within ECD_01924at 1990.189 kb on + strand, within ECD_01924at 1990.247 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,987,225 + ECD_01922 0.25 +0.2
1,987,287 + ECD_01922 0.30 -1.8
1,987,590 + ECD_01922 0.53 +0.0
1,987,829 + ECD_01922 0.71 -3.5
1,988,316 - ECD_01923 0.11 -0.5
1,988,399 + ECD_01923 0.18 -2.6
1,988,409 - ECD_01923 0.19 -1.3
1,988,418 + ECD_01923 0.20 -1.1
1,988,537 + ECD_01923 0.31 -1.3
1,988,538 - ECD_01923 0.31 -1.5
1,989,113 - ECD_01923 0.85 -1.1
1,989,133 + ECD_01923 0.87 -0.8
1,989,389 + ECD_01924 0.11 -1.2
1,989,610 + ECD_01924 0.32 -1.7
1,989,943 + ECD_01924 0.63 -1.5
1,990,112 - ECD_01924 0.79 -1.4
1,990,189 + ECD_01924 0.86 -1.6
1,990,247 + -2.1

Or see this region's nucleotide sequence