Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01859 and ECD_01860 are separated by 4 nucleotides ECD_01860 and ECD_01861 overlap by 4 nucleotides ECD_01861 and ECD_01862 are separated by 126 nucleotides ECD_01862 and ECD_01863 are separated by 2 nucleotides
ECD_01859: ECD_01859 - fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein, at 1,919,278 to 1,921,242
_01859
ECD_01860: ECD_01860 - protein that enables flagellar motor rotation, at 1,921,247 to 1,922,173
_01860
ECD_01861: ECD_01861 - proton conductor component of flagella motor, at 1,922,170 to 1,923,057
_01861
ECD_01862: ECD_01862 - flagellar class II regulon transcriptional activator, with FlhD, at 1,923,184 to 1,923,762
_01862
ECD_01863: ECD_01863 - flagellar class II regulon transcriptional activator, with FlhC, at 1,923,765 to 1,924,115
_01863
Position (kb)
1922
1923
1924 Strain fitness (log2 ratio)
-1
0
1 at 1921.228 kb on + strand at 1921.467 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.661 kb on - strand, within ECD_01860 at 1921.727 kb on - strand, within ECD_01860 at 1921.906 kb on - strand, within ECD_01860 at 1922.495 kb on - strand, within ECD_01861 at 1922.529 kb on + strand, within ECD_01861 at 1922.833 kb on - strand, within ECD_01861 at 1922.950 kb on - strand, within ECD_01861 at 1923.022 kb on - strand at 1923.043 kb on + strand at 1923.051 kb on + strand at 1923.051 kb on + strand at 1923.197 kb on - strand at 1923.468 kb on - strand, within ECD_01862
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,921,228 + +0.9 1,921,467 - ECD_01860 0.24 -1.6 1,921,550 - ECD_01860 0.33 +0.4 1,921,550 - ECD_01860 0.33 -0.8 1,921,550 - ECD_01860 0.33 -0.5 1,921,550 - ECD_01860 0.33 -0.7 1,921,661 - ECD_01860 0.45 -0.1 1,921,727 - ECD_01860 0.52 -0.7 1,921,906 - ECD_01860 0.71 +0.5 1,922,495 - ECD_01861 0.37 -0.0 1,922,529 + ECD_01861 0.40 +0.4 1,922,833 - ECD_01861 0.75 -0.7 1,922,950 - ECD_01861 0.88 -0.1 1,923,022 - -1.0 1,923,043 + +0.4 1,923,051 + -0.5 1,923,051 + -0.5 1,923,197 - -0.2 1,923,468 - ECD_01862 0.49 +0.1
Or see this region's nucleotide sequence