Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01851 and ECD_01852 are separated by 201 nucleotides ECD_01852 and ECD_01853 are separated by 10 nucleotides ECD_01853 and ECD_01854 are separated by 14 nucleotides
ECD_01851: ECD_01851 - flagellin export apparatus, substrate specificity protein, at 1,910,961 to 1,912,109
_01851
ECD_01852: ECD_01852 - chemotaxis regulator, protein phosphatase for CheY, at 1,912,311 to 1,912,955
_01852
ECD_01853: ECD_01853 - chemotaxis regulator transmitting signal to flagellar motor component, at 1,912,966 to 1,913,355
_01853
ECD_01854: ECD_01854 - fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA, at 1,913,370 to 1,914,419
_01854
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-1
0
1 at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.228 kb on + strand at 1912.574 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1913.193 kb on + strand, within ECD_01853 at 1913.375 kb on + strand at 1913.375 kb on + strand at 1913.459 kb on + strand at 1913.640 kb on + strand, within ECD_01854 at 1914.006 kb on - strand, within ECD_01854 at 1914.065 kb on - strand, within ECD_01854
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,912,131 - -0.1 1,912,131 - -0.1 1,912,131 - +0.2 1,912,131 - -0.0 1,912,228 + +0.2 1,912,574 + ECD_01852 0.41 +0.9 1,912,786 + ECD_01852 0.74 +0.5 1,912,786 + ECD_01852 0.74 +0.8 1,913,193 + ECD_01853 0.58 -0.4 1,913,375 + +0.9 1,913,375 + +1.7 1,913,459 + -0.3 1,913,640 + ECD_01854 0.26 +0.3 1,914,006 - ECD_01854 0.61 +0.3 1,914,065 - ECD_01854 0.66 +0.8
Or see this region's nucleotide sequence