Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01792 and ECD_01793 are separated by 165 nucleotides ECD_01793 and ECD_01794 are separated by 12 nucleotides ECD_01794 and ECD_01795 are separated by 668 nucleotides
ECD_01792: ECD_01792 - 23S rRNA m(1)G745 methyltransferase, SAM-dependent, at 1,851,978 to 1,852,787
_01792
ECD_01793: ECD_01793 - stress protein, member of the CspA-family, at 1,852,953 to 1,853,162
_01793
ECD_01794: ECD_01794 - DUF2527 family heat-induced protein, at 1,853,175 to 1,853,318
_01794
ECD_01795: ECD_01795 - putative inner membrane protein, at 1,853,987 to 1,854,274
_01795
Position (kb)
1853
1854 Strain fitness (log2 ratio)
-1
0
1 at 1852.493 kb on - strand, within ECD_01792 at 1852.496 kb on - strand, within ECD_01792 at 1852.603 kb on - strand, within ECD_01792 at 1852.687 kb on + strand, within ECD_01792 at 1852.732 kb on + strand at 1852.733 kb on - strand at 1852.733 kb on - strand at 1852.733 kb on - strand at 1852.733 kb on - strand at 1852.881 kb on - strand at 1852.881 kb on - strand at 1852.926 kb on - strand at 1852.926 kb on - strand at 1852.959 kb on - strand at 1852.959 kb on - strand at 1852.966 kb on - strand at 1853.071 kb on - strand, within ECD_01793 at 1853.071 kb on - strand, within ECD_01793 at 1853.121 kb on - strand, within ECD_01793 at 1853.203 kb on - strand, within ECD_01794 at 1853.212 kb on - strand, within ECD_01794 at 1853.212 kb on - strand, within ECD_01794 at 1853.244 kb on - strand, within ECD_01794 at 1853.244 kb on - strand, within ECD_01794 at 1853.244 kb on - strand, within ECD_01794 at 1853.246 kb on - strand, within ECD_01794 at 1853.246 kb on - strand, within ECD_01794 at 1853.319 kb on - strand at 1853.449 kb on - strand at 1853.581 kb on - strand at 1854.014 kb on - strand at 1854.206 kb on - strand, within ECD_01795 at 1854.225 kb on - strand, within ECD_01795 at 1854.225 kb on - strand, within ECD_01795 at 1854.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,852,493 - ECD_01792 0.64 -0.2 1,852,496 - ECD_01792 0.64 -0.5 1,852,603 - ECD_01792 0.77 +0.3 1,852,687 + ECD_01792 0.88 -0.2 1,852,732 + -1.0 1,852,733 - +0.3 1,852,733 - -0.3 1,852,733 - -0.1 1,852,733 - +0.5 1,852,881 - -1.0 1,852,881 - +0.4 1,852,926 - -0.2 1,852,926 - -0.1 1,852,959 - -0.3 1,852,959 - +0.3 1,852,966 - -0.8 1,853,071 - ECD_01793 0.56 -0.2 1,853,071 - ECD_01793 0.56 -0.5 1,853,121 - ECD_01793 0.80 -0.1 1,853,203 - ECD_01794 0.19 -0.5 1,853,212 - ECD_01794 0.26 -0.2 1,853,212 - ECD_01794 0.26 -1.2 1,853,244 - ECD_01794 0.48 -0.4 1,853,244 - ECD_01794 0.48 -0.8 1,853,244 - ECD_01794 0.48 -0.9 1,853,246 - ECD_01794 0.49 -0.4 1,853,246 - ECD_01794 0.49 -0.5 1,853,319 - +0.6 1,853,449 - -0.8 1,853,581 - +0.3 1,854,014 - +0.1 1,854,206 - ECD_01795 0.76 +0.4 1,854,225 - ECD_01795 0.83 +0.4 1,854,225 - ECD_01795 0.83 +0.4 1,854,305 - +0.1
Or see this region's nucleotide sequence