Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01599 and ECD_01600 are separated by 0 nucleotides ECD_01600 and ECD_01601 are separated by 3 nucleotides ECD_01601 and ECD_01602 are separated by 3 nucleotides
ECD_01599: ECD_01599 - SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex, at 1,652,115 to 1,654,337
_01599
ECD_01600: ECD_01600 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,654,338 to 1,655,396
_01600
ECD_01601: ECD_01601 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,655,400 to 1,656,020
_01601
ECD_01602: ECD_01602 - SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase, at 1,656,024 to 1,656,719
_01602
Position (kb) 1654
1655
1656 Strain fitness (log2 ratio) -1
0
1 at 1653.548 kb on + strand, within ECD_01599 at 1654.355 kb on + strand at 1654.355 kb on + strand at 1654.355 kb on + strand at 1654.913 kb on + strand, within ECD_01600 at 1654.952 kb on + strand, within ECD_01600 at 1655.562 kb on + strand, within ECD_01601
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,653,548 + ECD_01599 0.64 +0.3 1,654,355 + +1.1 1,654,355 + -0.7 1,654,355 + -0.4 1,654,913 + ECD_01600 0.54 -0.6 1,654,952 + ECD_01600 0.58 +0.2 1,655,562 + ECD_01601 0.26 -0.8
Or see this region's nucleotide sequence