Strain Fitness in Escherichia coli BL21 around ECD_01586

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01585 and ECD_01586 overlap by 4 nucleotidesECD_01586 and ECD_01587 are separated by 390 nucleotides ECD_01585: ECD_01585 - glucuronide transporter, at 1,638,087 to 1,639,460 _01585 ECD_01586: ECD_01586 - beta-D-glucuronidase, at 1,639,457 to 1,641,268 _01586 ECD_01587: ECD_01587 - transcriptional repressor, at 1,641,659 to 1,642,249 _01587 Position (kb) 1639 1640 1641 1642Strain fitness (log2 ratio) -1 0 1at 1639.114 kb on + strand, within ECD_01585at 1639.215 kb on + strand, within ECD_01585at 1639.676 kb on - strand, within ECD_01586at 1640.882 kb on - strand, within ECD_01586at 1641.082 kb on - strand, within ECD_01586at 1641.872 kb on - strand, within ECD_01587

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,639,114 + ECD_01585 0.75 +0.0
1,639,215 + ECD_01585 0.82 -0.7
1,639,676 - ECD_01586 0.12 -0.3
1,640,882 - ECD_01586 0.79 -0.7
1,641,082 - ECD_01586 0.90 -0.7
1,641,872 - ECD_01587 0.36 +0.9

Or see this region's nucleotide sequence